Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LZE81_RS14945 Genome accession   NZ_CP090000
Coordinates   3456513..3457901 (+) Length   462 a.a.
NCBI ID   WP_060744723.1    Uniprot ID   -
Organism   Xanthomonas translucens strain B1FA     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451513..3462901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZE81_RS14930 (LZE81_14930) sucD 3452525..3453397 (-) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  LZE81_RS14935 (LZE81_14935) sucC 3453421..3454584 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  LZE81_RS14940 (LZE81_14940) - 3454825..3456438 (+) 1614 WP_233700340.1 ATP-binding protein -
  LZE81_RS14945 (LZE81_14945) pilR 3456513..3457901 (+) 1389 WP_060744723.1 sigma-54 dependent transcriptional regulator Regulator
  LZE81_RS14950 (LZE81_14950) - 3458090..3458272 (+) 183 WP_003477093.1 YhfG family protein -
  LZE81_RS14955 (LZE81_14955) - 3458269..3458886 (+) 618 WP_003477095.1 Fic family protein -
  LZE81_RS14960 (LZE81_14960) pilB 3458896..3460632 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZE81_RS14965 (LZE81_14965) - 3460895..3461293 (+) 399 WP_196484464.1 hypothetical protein -
  LZE81_RS14970 (LZE81_14970) pilA/pilAI 3461378..3461809 (-) 432 WP_060744724.1 pilin Machinery gene

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49787.16 Da        Isoelectric Point: 6.5828

>NTDB_id=639962 LZE81_RS14945 WP_060744723.1 3456513..3457901(+) (pilR) [Xanthomonas translucens strain B1FA]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=639962 LZE81_RS14945 WP_060744723.1 3456513..3457901(+) (pilR) [Xanthomonas translucens strain B1FA]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTAGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGTGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTATATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472