Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVW35_RS16525 Genome accession   NZ_CP089985
Coordinates   3675778..3678003 (-) Length   741 a.a.
NCBI ID   WP_233891143.1    Uniprot ID   -
Organism   Pseudomonas sp. HN11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3670778..3683003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS16490 (LVW35_16490) murB 3671183..3672202 (-) 1020 WP_233891138.1 UDP-N-acetylmuramate dehydrogenase -
  LVW35_RS16495 (LVW35_16495) - 3672199..3672663 (-) 465 WP_233891139.1 low molecular weight protein-tyrosine-phosphatase -
  LVW35_RS16500 (LVW35_16500) kdsB 3672663..3673427 (-) 765 WP_233891140.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LVW35_RS16505 (LVW35_16505) - 3673424..3673609 (-) 186 WP_003174668.1 Trm112 family protein -
  LVW35_RS16510 (LVW35_16510) lpxK 3673634..3674644 (-) 1011 WP_233891141.1 tetraacyldisaccharide 4'-kinase -
  LVW35_RS16515 (LVW35_16515) - 3674644..3675072 (-) 429 WP_233891142.1 biopolymer transporter ExbD -
  LVW35_RS16520 (LVW35_16520) exbB 3675069..3675704 (-) 636 WP_233896499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LVW35_RS16525 (LVW35_16525) comA 3675778..3678003 (-) 2226 WP_233891143.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVW35_RS16530 (LVW35_16530) - 3678139..3678654 (+) 516 WP_233891144.1 DUF2062 domain-containing protein -
  LVW35_RS16535 (LVW35_16535) - 3678913..3681666 (+) 2754 WP_233891145.1 response regulator -
  LVW35_RS16540 (LVW35_16540) - 3681690..3682679 (+) 990 WP_233891146.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80476.34 Da        Isoelectric Point: 10.6627

>NTDB_id=639705 LVW35_RS16525 WP_233891143.1 3675778..3678003(-) (comA) [Pseudomonas sp. HN11]
MRTGMFAFALGLLALRFLPALPATGWLIALLVLALMLLPFRTHPLAFFLLGISWACISAQWALDDRLRPALDGQTRWVEG
RVSGLPQQTGDGVRFVLTDSRSRNAALPERIRVSWRGGPQVRGGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLAAADWQVLQGTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGYWPRTWPWVPWACGLAFTAAMGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVMILAFGGRLGPWSLWQAWTRPQWLIAIGLLPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALDALLNGLAWLAEQMPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMLLLAV
FAPRALVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
QAITKGMPIKRVVGGETEGLPLSLGTQPCVSGERWTWDGVTFELWRWPDAISGNAKSCVLQVQANGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHSQVMARYQQLGSQVYDSAEQGAVRLQL
GAFAPPDVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=639705 LVW35_RS16525 WP_233891143.1 3675778..3678003(-) (comA) [Pseudomonas sp. HN11]
ATGAGGACAGGGATGTTCGCGTTTGCGCTTGGGTTACTGGCCTTGCGCTTTTTACCAGCGTTGCCGGCGACGGGATGGCT
CATCGCCTTGTTGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCACGCACCCACTGGCGTTTTTCCTGCTGGGGATCAGTT
GGGCGTGCATCAGCGCGCAGTGGGCGCTGGATGATCGGCTGAGGCCGGCGCTGGATGGCCAGACACGCTGGGTGGAAGGG
CGGGTCAGCGGGCTGCCGCAACAGACGGGCGACGGTGTGCGTTTCGTACTGACCGACAGTCGGTCACGTAACGCCGCGTT
GCCTGAACGCATCCGGGTGTCTTGGCGAGGCGGACCGCAGGTGCGCGGCGGTGAACGCTGGCGCCTGGCAATTACCCTCA
AGCGGCCGGCTGGGTTGCTGAACTTCCATGGGTTTGATCAGGAAGCCTGGTTGCTCGCCCAGCGCATCGGCGCCACGGGC
ACAGTAAAAGACGGCGAACGTCTTGCACCGGCCCGGAACGCCTGGCGCGACAGTGTGCGTCAGCGTCTGATGGCGGTGGA
CGCCCAAGGCCGTGAGGCCGGCCTGATTGCCTTGGTGCTGGGTGACGGTTCCGGATTGGCCGCCGCCGATTGGCAGGTGT
TGCAGGGCACCGGCACTGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGGTTGCTGGCAGGCTTGATTTACGGTTTG
ATCGCCGGACTGGCGCGCTATGGTTACTGGCCGCGCACCTGGCCATGGGTGCCCTGGGCGTGTGGGCTGGCATTCACCGC
TGCTATGGGCTACGGCTTGCTGGCTGGGTTTGGTGTGCCGGTGCAGCGCGCCTGTGTGATGGTCGGGCTGGTGCTGTTGT
GGCGGCTGCGTTTCCGTCATTTGGGGCTGTGGTGGCCGTTGCTGCTGGCACTCAATGGGGTATTGGTGCTGGAACCGTTG
GCAAGTTTGCAGCCGGGATTCTGGCTGTCATTTGCAGCGGTAGCGGTAATGATCCTCGCGTTTGGTGGTCGGCTGGGGCC
GTGGAGCCTATGGCAGGCATGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTACCGGTCTTGCTCGTGCTGGGGT
TGCCCATCAGCTTGAGTGCGCCGTTCGCTAACCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCGTTGGCCTTG
TTGGGCACTGCTTTGCTGGCGCTGCCGTTTGTGGGTGAAGGCCTGTTGTGGTTAGCGGGTGGAGCACTGGATGCCTTGCT
CAACGGCTTGGCGTGGCTCGCCGAGCAGATGCCGGCCTGGATTCCGGCCGACGTACCGCTGGGGTATTGGCTGGTGAGTC
TGTTGGGCGCCGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTGCGCCGCGAGCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGCCAATCGCTGATTCT
GCGCACCCGACACCACACCTTGCTCTACGACGCCGGCCCGCGCTCCGGCACCTTTGACCTGGGCGCGCGCGTGGTACTGC
CCTCTCTGCGAAAACTCGGGGTAGGGGAGCTGGACATGCTGTTGCTCAGCCACGCCGACGCCGATCACGCCGGTGGCGCG
CAAGCCATTACCAAGGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAACCGAGGGTCTGCCGCTATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAACGCTGGACCTGGGACGGTGTGACCTTCGAACTGTGGCGGTGGCCGGACGCCATTAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCTTGCTGCTGACCGGTGATATTGACCGCGCCGCCGAG
CAGGCTATGCTCGCGTCCCCCCTGGCGGTGCCTACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCATCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCACGGTCCGTGCTGATCTCGCGGGGGCGCAACAACGCGTTCGGACATCCCCATT
CGCAGGTGATGGCGCGTTACCAGCAACTGGGCAGCCAGGTGTATGACAGCGCCGAGCAGGGCGCCGTGCGTCTGCAACTG
GGGGCTTTTGCGCCGCCGGATGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.419

100

0.382