Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LVW35_RS16520 Genome accession   NZ_CP089985
Coordinates   3675069..3675704 (-) Length   211 a.a.
NCBI ID   WP_233896499.1    Uniprot ID   -
Organism   Pseudomonas sp. HN11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3670069..3680704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS16485 (LVW35_16485) - 3670449..3671120 (+) 672 WP_233891137.1 Bax inhibitor-1/YccA family protein -
  LVW35_RS16490 (LVW35_16490) murB 3671183..3672202 (-) 1020 WP_233891138.1 UDP-N-acetylmuramate dehydrogenase -
  LVW35_RS16495 (LVW35_16495) - 3672199..3672663 (-) 465 WP_233891139.1 low molecular weight protein-tyrosine-phosphatase -
  LVW35_RS16500 (LVW35_16500) kdsB 3672663..3673427 (-) 765 WP_233891140.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LVW35_RS16505 (LVW35_16505) - 3673424..3673609 (-) 186 WP_003174668.1 Trm112 family protein -
  LVW35_RS16510 (LVW35_16510) lpxK 3673634..3674644 (-) 1011 WP_233891141.1 tetraacyldisaccharide 4'-kinase -
  LVW35_RS16515 (LVW35_16515) - 3674644..3675072 (-) 429 WP_233891142.1 biopolymer transporter ExbD -
  LVW35_RS16520 (LVW35_16520) exbB 3675069..3675704 (-) 636 WP_233896499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LVW35_RS16525 (LVW35_16525) comA 3675778..3678003 (-) 2226 WP_233891143.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVW35_RS16530 (LVW35_16530) - 3678139..3678654 (+) 516 WP_233891144.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.06 Da        Isoelectric Point: 7.2805

>NTDB_id=639704 LVW35_RS16520 WP_233896499.1 3675069..3675704(-) (exbB) [Pseudomonas sp. HN11]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEYLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=639704 LVW35_RS16520 WP_233896499.1 3675069..3675704(-) (exbB) [Pseudomonas sp. HN11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGTATTTGCTGGGACAGGTCTGGAGCTGGATCAAGAACA
AGCAGCTGGACAAGGATAAACTCAAGGAACTGCGCGCCAACTCCCCATTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAATGCGCTCGGCACCATCGCGGCCATGGCGCCGTTGCTTGGCTTGCTCGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCGGTACTGGCCGGGGGTATCTCCAAAGCGCTGATCACCACAGCC
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAATTGGTAGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844