Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   P795_RS01610 Genome accession   NC_023028
Coordinates   345322..346140 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii ZW85-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340322..351140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS18785 - 340905..341035 (-) 131 Protein_302 hypothetical protein -
  P795_RS01580 (P795_1540) rpoZ 341073..341351 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  P795_RS01585 (P795_1545) gmk 341424..342053 (-) 630 WP_023896139.1 guanylate kinase -
  P795_RS01590 (P795_1550) ispH 342176..343126 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P795_RS01595 (P795_1555) fimU 343296..343769 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  P795_RS01600 (P795_1560) pilV 343763..344323 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  P795_RS01605 (P795_1565) pilW 344324..345325 (+) 1002 WP_023896140.1 PilW family protein Machinery gene
  P795_RS01610 (P795_1570) pilX 345322..346140 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  P795_RS01615 (P795_1575) pilY1 346152..350006 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  P795_RS01620 (P795_1580) pilY2 350019..350501 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  P795_RS01625 (P795_1585) pilE 350498..350923 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=63956 P795_RS01610 WP_000149377.1 345322..346140(+) (pilX) [Acinetobacter baumannii ZW85-1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=63956 P795_RS01610 WP_000149377.1 345322..346140(+) (pilX) [Acinetobacter baumannii ZW85-1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment