Detailed information NTG0639532

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LRP86_RS02280
• Genome accession: NZ_CP089973
• Coordinates: 484079..486325 (-)
• Length: 748 a.a.
• NCBI ID: WP_028237405.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain WCS365
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 479079..491325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRP86_RS02245 (LRP86_00449)	murB	479462..480481 (-)	1020	WP_003204282.1	UDP-N-acetylmuramate dehydrogenase	-
LRP86_RS02250 (LRP86_00450)	-	480478..480942 (-)	465	WP_013694001.1	low molecular weight protein-tyrosine-phosphatase	-
LRP86_RS02255 (LRP86_00451)	kdsB	480942..481706 (-)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LRP86_RS02260 (LRP86_00452)	-	481703..481888 (-)	186	WP_003179363.1	Trm112 family protein	-
LRP86_RS02265 (LRP86_00453)	lpxK	481912..482922 (-)	1011	WP_038859038.1	tetraacyldisaccharide 4'-kinase	-
LRP86_RS02270 (LRP86_00454)	-	482922..483350 (-)	429	WP_013694002.1	ExbD/TolR family protein	-
LRP86_RS02275 (LRP86_00455)	exbB	483347..483982 (-)	636	WP_003204294.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LRP86_RS02280 (LRP86_00456)	comA	484079..486325 (-)	2247	WP_028237405.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LRP86_RS02285 (LRP86_00457)	-	486470..486985 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
LRP86_RS02290 (LRP86_00458)	-	487072..487851 (-)	780	WP_003204300.1	ABC transporter permease	-
LRP86_RS02295 (LRP86_00459)	-	487854..488786 (-)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
LRP86_RS02300 (LRP86_00460)	-	488923..489546 (-)	624	WP_053163089.1	glutathione S-transferase family protein	-
LRP86_RS02305 (LRP86_00461)	-	489592..490251 (-)	660	WP_013694005.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 80989.32 Da
• Isoelectric Point: 9.6855

>NTDB_id=639532 LRP86_RS02280 WP_028237405.1 484079..486325(-) (comA) [Pseudomonas brassicacearum strain WCS365]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPSVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHADADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLVVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFGVPRTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=639532 LRP86_RS02280 WP_028237405.1 484079..486325(-) (comA) [Pseudomonas brassicacearum strain WCS365]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGTTGGACGACCGGTTACCCATCGCGCTTGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCGATGCGTCTCGCCTGGTTCGGTGGTCCGTCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCGGACGCGCTGCCCGCCGAACTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGTGTCTTGGTGGTGGAGGCGGGCGGTGAACGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCAGTATTGATCTCCCGAGGGCAGGGCAACGCATTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCAGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGGGGTGCCGCGCACCGAGGCCGGGCACCGCCGTTATTGGCGTGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.732	95.722	0.591
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364