Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LRP86_RS02275 Genome accession   NZ_CP089973
Coordinates   483347..483982 (-) Length   211 a.a.
NCBI ID   WP_003204294.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain WCS365     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478347..488982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP86_RS02240 (LRP86_00448) - 478726..479196 (-) 471 WP_003204280.1 (2Fe-2S)-binding protein -
  LRP86_RS02245 (LRP86_00449) murB 479462..480481 (-) 1020 WP_003204282.1 UDP-N-acetylmuramate dehydrogenase -
  LRP86_RS02250 (LRP86_00450) - 480478..480942 (-) 465 WP_013694001.1 low molecular weight protein-tyrosine-phosphatase -
  LRP86_RS02255 (LRP86_00451) kdsB 480942..481706 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LRP86_RS02260 (LRP86_00452) - 481703..481888 (-) 186 WP_003179363.1 Trm112 family protein -
  LRP86_RS02265 (LRP86_00453) lpxK 481912..482922 (-) 1011 WP_038859038.1 tetraacyldisaccharide 4'-kinase -
  LRP86_RS02270 (LRP86_00454) - 482922..483350 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  LRP86_RS02275 (LRP86_00455) exbB 483347..483982 (-) 636 WP_003204294.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LRP86_RS02280 (LRP86_00456) comA 484079..486325 (-) 2247 WP_028237405.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LRP86_RS02285 (LRP86_00457) - 486470..486985 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  LRP86_RS02290 (LRP86_00458) - 487072..487851 (-) 780 WP_003204300.1 ABC transporter permease -
  LRP86_RS02295 (LRP86_00459) - 487854..488786 (-) 933 WP_003204301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=639531 LRP86_RS02275 WP_003204294.1 483347..483982(-) (exbB) [Pseudomonas brassicacearum strain WCS365]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=639531 LRP86_RS02275 WP_003204294.1 483347..483982(-) (exbB) [Pseudomonas brassicacearum strain WCS365]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGTTCCGGCATGACCACTAACGCTGCGGTGCTGGCGGGGGGGATCTCCAAGGCTTTGATCACCACCGCT
GCTGGCCTGATGGTCGGTATCCCTTCGGTGTTCTTCCACAGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844