Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   ND436_RS02345 Genome accession   NZ_CP106918
Coordinates   451809..452750 (+) Length   313 a.a.
NCBI ID   WP_047920195.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 446809..457750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS02320 (ND436_002320) - 447458..447967 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ND436_RS02325 (ND436_002325) - 448199..448780 (-) 582 WP_003690895.1 superoxide dismutase -
  ND436_RS02330 (ND436_002330) dnaB 448944..450350 (+) 1407 WP_003699622.1 replicative DNA helicase -
  ND436_RS02335 (ND436_002335) pilH 450504..451169 (+) 666 WP_260253300.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ND436_RS02340 (ND436_002340) pilV 451201..451812 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  ND436_RS02345 (ND436_002345) pilJ 451809..452750 (+) 942 WP_047920195.1 PilW family protein Machinery gene
  ND436_RS02350 (ND436_002350) pilK 452729..453340 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ND436_RS02355 (ND436_002355) pilL 453342..453815 (+) 474 WP_260253376.1 PilX family type IV pilin Machinery gene
  ND436_RS02360 (ND436_002360) - 453885..454193 (-) 309 WP_025456177.1 AzlD family protein -
  ND436_RS02365 (ND436_002365) - 454190..454900 (-) 711 Protein_465 AzlC family ABC transporter permease -
  ND436_RS02370 (ND436_002370) dut 455066..455518 (+) 453 WP_003699637.1 dUTP diphosphatase -
  ND436_RS02375 (ND436_002375) dapC 455594..456781 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  ND436_RS02380 (ND436_002380) yaaA 456937..457716 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 313 a.a.        Molecular weight: 34486.21 Da        Isoelectric Point: 9.1777

>NTDB_id=638541 ND436_RS02345 WP_047920195.1 451809..452750(+) (pilJ) [Neisseria gonorrhoeae strain 9071]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSSCAA
ISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMRVRY
IYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=638541 ND436_RS02345 WP_047920195.1 451809..452750(+) (pilJ) [Neisseria gonorrhoeae strain 9071]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAGGTTTGTTCC
GCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGAGTGCGGTAT
ATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

93.93

100

0.939