Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ND436_RS02335 Genome accession   NZ_CP106918
Coordinates   450504..451169 (+) Length   221 a.a.
NCBI ID   WP_260253300.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445504..456169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS02310 (ND436_002310) cysT 445791..446618 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  ND436_RS02315 (ND436_002315) - 446799..447131 (+) 333 WP_003687908.1 hypothetical protein -
  ND436_RS02320 (ND436_002320) - 447458..447967 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ND436_RS02325 (ND436_002325) - 448199..448780 (-) 582 WP_003690895.1 superoxide dismutase -
  ND436_RS02330 (ND436_002330) dnaB 448944..450350 (+) 1407 WP_003699622.1 replicative DNA helicase -
  ND436_RS02335 (ND436_002335) pilH 450504..451169 (+) 666 WP_260253300.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ND436_RS02340 (ND436_002340) pilV 451201..451812 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  ND436_RS02345 (ND436_002345) pilJ 451809..452750 (+) 942 WP_047920195.1 PilW family protein Machinery gene
  ND436_RS02350 (ND436_002350) pilK 452729..453340 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ND436_RS02355 (ND436_002355) pilL 453342..453815 (+) 474 WP_260253376.1 PilX family type IV pilin Machinery gene
  ND436_RS02360 (ND436_002360) - 453885..454193 (-) 309 WP_025456177.1 AzlD family protein -
  ND436_RS02365 (ND436_002365) - 454190..454900 (-) 711 Protein_465 AzlC family ABC transporter permease -
  ND436_RS02370 (ND436_002370) dut 455066..455518 (+) 453 WP_003699637.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24634.01 Da        Isoelectric Point: 8.8981

>NTDB_id=638539 ND436_RS02335 WP_260253300.1 450504..451169(+) (pilH) [Neisseria gonorrhoeae strain 9071]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYVQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=638539 ND436_RS02335 WP_260253300.1 450504..451169(+) (pilH) [Neisseria gonorrhoeae strain 9071]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATGTCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.593

100

0.896