Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   ND436_RS02355 Genome accession   NZ_CP106918
Coordinates   453342..453815 (+) Length   157 a.a.
NCBI ID   WP_260253376.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448342..458815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS02330 (ND436_002330) dnaB 448944..450350 (+) 1407 WP_003699622.1 replicative DNA helicase -
  ND436_RS02335 (ND436_002335) pilH 450504..451169 (+) 666 WP_260253300.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ND436_RS02340 (ND436_002340) pilV 451201..451812 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  ND436_RS02345 (ND436_002345) pilJ 451809..452750 (+) 942 WP_047920195.1 PilW family protein Machinery gene
  ND436_RS02350 (ND436_002350) pilK 452729..453340 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ND436_RS02355 (ND436_002355) pilL 453342..453815 (+) 474 WP_260253376.1 PilX family type IV pilin Machinery gene
  ND436_RS02360 (ND436_002360) - 453885..454193 (-) 309 WP_025456177.1 AzlD family protein -
  ND436_RS02365 (ND436_002365) - 454190..454900 (-) 711 Protein_465 AzlC family ABC transporter permease -
  ND436_RS02370 (ND436_002370) dut 455066..455518 (+) 453 WP_003699637.1 dUTP diphosphatase -
  ND436_RS02375 (ND436_002375) dapC 455594..456781 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  ND436_RS02380 (ND436_002380) yaaA 456937..457716 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17501.31 Da        Isoelectric Point: 9.5776

>NTDB_id=638543 ND436_RS02355 WP_260253376.1 453342..453815(+) (pilL) [Neisseria gonorrhoeae strain 9071]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAETGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=638543 ND436_RS02355 WP_260253376.1 453342..453815(+) (pilL) [Neisseria gonorrhoeae strain 9071]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGAGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

90.446

100

0.904
  pilX Neisseria meningitidis 8013

87.898

100

0.879