Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ND010_RS02345 Genome accession   NZ_CP106826
Coordinates   453797..454405 (+) Length   202 a.a.
NCBI ID   WP_215318018.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9464     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448797..459405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND010_RS02320 (ND010_02320) - 449093..449674 (-) 582 WP_003701053.1 superoxide dismutase -
  ND010_RS02325 (ND010_02325) dnaB 449837..451243 (+) 1407 WP_241532347.1 replicative DNA helicase -
  ND010_RS02330 (ND010_02330) pilH 451551..452216 (+) 666 WP_260236888.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ND010_RS02335 (ND010_02335) pilV/pilI 452245..452853 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  ND010_RS02340 (ND010_02340) pilJ 452850..453818 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  ND010_RS02345 (ND010_02345) pilK 453797..454405 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ND010_RS02350 (ND010_02350) pilL 454407..454880 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  ND010_RS02355 (ND010_02355) - 455492..455937 (-) 446 Protein_459 AzlC family ABC transporter permease -
  ND010_RS02360 (ND010_02360) dut 456103..456555 (+) 453 WP_260236890.1 dUTP diphosphatase -
  ND010_RS02365 (ND010_02365) dapC 456633..457820 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -
  ND010_RS02370 (ND010_02370) yaaA 458131..458910 (+) 780 WP_260236892.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21884.77 Da        Isoelectric Point: 8.4516

>NTDB_id=638401 ND010_RS02345 WP_215318018.1 453797..454405(+) (pilK) [Neisseria gonorrhoeae strain 9464]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCGKGLCTAVNVRTNNANEESFGNIVVQSTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=638401 ND010_RS02345 WP_215318018.1 453797..454405(+) (pilK) [Neisseria gonorrhoeae strain 9464]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAAGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.581

100

0.95