Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVC68_RS00845 Genome accession   NZ_CP089742
Coordinates   175860..177242 (+) Length   460 a.a.
NCBI ID   WP_209424119.1    Uniprot ID   -
Organism   Melaminivora jejuensis strain KACC 19629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 170860..182242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVC68_RS00820 (LVC68_00820) - 171055..172221 (-) 1167 WP_209423262.1 ABC transporter substrate-binding protein -
  LVC68_RS00825 (LVC68_00825) - 172271..172978 (-) 708 WP_209423260.1 ABC transporter ATP-binding protein -
  LVC68_RS00830 (LVC68_00830) - 172965..173729 (-) 765 WP_209423258.1 ABC transporter ATP-binding protein -
  LVC68_RS00835 (LVC68_00835) - 173716..174690 (-) 975 WP_209423256.1 branched-chain amino acid ABC transporter permease -
  LVC68_RS00840 (LVC68_00840) - 174692..175555 (-) 864 WP_209423254.1 branched-chain amino acid ABC transporter permease -
  LVC68_RS00845 (LVC68_00845) radA 175860..177242 (+) 1383 WP_209424119.1 DNA repair protein RadA Machinery gene
  LVC68_RS00850 (LVC68_00850) - 177305..177715 (+) 411 WP_209423251.1 glycerate kinase -
  LVC68_RS00855 (LVC68_00855) - 177779..178717 (+) 939 WP_209423249.1 branched-chain amino acid transaminase -
  LVC68_RS00860 (LVC68_00860) - 178723..178932 (+) 210 WP_209423247.1 zinc-finger domain-containing protein -
  LVC68_RS00865 (LVC68_00865) - 178951..179766 (+) 816 WP_209423245.1 glycosyltransferase family 2 protein -
  LVC68_RS00870 (LVC68_00870) - 179814..181124 (+) 1311 WP_209423243.1 O-antigen ligase -
  LVC68_RS00875 (LVC68_00875) - 181109..182083 (+) 975 WP_209423241.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48109.59 Da        Isoelectric Point: 7.3836

>NTDB_id=638398 LVC68_RS00845 WP_209424119.1 175860..177242(+) (radA) [Melaminivora jejuensis strain KACC 19629]
MAKEKTLYTCTECAATSPRWLGKCPGCGAWNTLIETVADSPGGGRNRLSTPQYAGLAQAQAVMPLSSIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLEASAVNVLAEIQLE
KILATVQATQPAVCVIDSIQTMYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVILVGHVTKEGAIAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLRGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDS
GGPSPRRLSVGLERDRLAMLLAVLHRHAGIASADQDVFVNAVGGVRISEPAADLAVLLAITSSLRARALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLAIHAVERVEEAMQVVRGLE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=638398 LVC68_RS00845 WP_209424119.1 175860..177242(+) (radA) [Melaminivora jejuensis strain KACC 19629]
ATGGCCAAGGAAAAAACCCTCTACACCTGCACCGAGTGCGCCGCCACCAGTCCGCGCTGGCTGGGCAAGTGCCCTGGCTG
CGGCGCCTGGAACACCCTGATCGAGACCGTCGCCGACAGCCCGGGCGGCGGCAGGAACCGCCTGAGCACGCCGCAATACG
CCGGTCTGGCGCAGGCGCAGGCCGTGATGCCGCTCTCCAGCATCGAGGCCACCGAAGTGGCGCGCACGGCCAGCGGCATC
GAGGAGCTCGACCGCGTGCTGGGCGGCGGTGTGGTCGAGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATTGGCAA
GTCCACCTTGCTGCTGCAGGCCATGGACGCGCTGCAGCGCGCTGGCCTGCCGACGCTGTACGTCACCGGCGAGGAAAGTG
GCGCGCAGGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGAGGCCAGCGCCGTCAACGTGCTGGCCGAGATCCAGCTGGAA
AAGATCCTGGCCACGGTGCAGGCCACGCAGCCGGCGGTGTGCGTGATCGACTCCATCCAGACCATGTACTCGGATCAGCT
GACCAGCGCCCCCGGCAGCGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTGACGCGCCTGGCCAAGGCCACCGGCATTG
CCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCATTGCCGGCCCGCGCGTACTGGAGCACATGGTCGATACGGTG
CTGTACTTCGAGGGCGACACGCATAGCAGCTTTCGCCTGGTGCGCGCCATCAAGAACCGTTTTGGCGCCGTCAACGAGAT
CGGCGTCTTCGCCATGACCGAGCGTGGCCTGCGCGGCGTGTCCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCGAGC
CGGTGCCCGGCTCGTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACAGC
GGCGGCCCCAGTCCCCGGCGCCTGTCGGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCA
TGCCGGCATCGCCTCGGCAGATCAGGATGTGTTCGTCAACGCCGTCGGCGGCGTGCGCATCAGCGAGCCGGCAGCCGATT
TGGCGGTGCTGCTGGCCATCACCAGCAGCCTGCGCGCGCGCGCCCTGCCCAAGGGCTTCATCGCCTTTGGCGAGGTCGGC
CTGGCCGGCGAAGTGCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTCACCGTCGCCGT
CGTGCCCAAGGCCAATGCCCCGAAAAAACCCATCGCCGGCCTGGCCATCCATGCCGTGGAGCGCGTCGAGGAGGCCATGC
AGGTGGTGCGCGGGCTGGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.487
  radA Streptococcus mitis NCTC 12261

45.154

98.696

0.446
  radA Streptococcus mitis SK321

46.868

93.696

0.439
  radA Streptococcus pneumoniae Rx1

46.868

93.696

0.439
  radA Streptococcus pneumoniae D39

46.868

93.696

0.439
  radA Streptococcus pneumoniae R6

46.868

93.696

0.439
  radA Streptococcus pneumoniae TIGR4

46.868

93.696

0.439