Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LVC68_RS01555 Genome accession   NZ_CP089742
Coordinates   310261..311799 (+) Length   512 a.a.
NCBI ID   WP_209423117.1    Uniprot ID   -
Organism   Melaminivora jejuensis strain KACC 19629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305261..316799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVC68_RS01530 (LVC68_01530) - 306672..307376 (+) 705 WP_209423121.1 SPOR domain-containing protein -
  LVC68_RS01535 (LVC68_01535) - 307481..308143 (+) 663 WP_209423120.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVC68_RS01540 (LVC68_01540) - 308140..308670 (+) 531 WP_209423119.1 bacteriohemerythrin -
  LVC68_RS01545 (LVC68_01545) lptA 308731..309384 (+) 654 WP_209423118.1 lipopolysaccharide transport periplasmic protein LptA -
  LVC68_RS01550 (LVC68_01550) lptB 309387..310175 (+) 789 WP_209424113.1 LPS export ABC transporter ATP-binding protein -
  LVC68_RS01555 (LVC68_01555) rpoN/rpoN1 310261..311799 (+) 1539 WP_209423117.1 RNA polymerase factor sigma-54 Machinery gene
  LVC68_RS01560 (LVC68_01560) - 311812..312282 (+) 471 WP_209423116.1 thioesterase family protein -
  LVC68_RS01565 (LVC68_01565) - 312194..314068 (-) 1875 WP_209423115.1 methyl-accepting chemotaxis protein -
  LVC68_RS01570 (LVC68_01570) - 314188..315489 (+) 1302 WP_209423114.1 class I SAM-dependent RNA methyltransferase -
  LVC68_RS01575 (LVC68_01575) - 315476..315958 (+) 483 WP_209423113.1 putative toxin-antitoxin system toxin component, PIN family -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55727.77 Da        Isoelectric Point: 4.8495

>NTDB_id=638400 LVC68_RS01555 WP_209423117.1 310261..311799(+) (rpoN/rpoN1) [Melaminivora jejuensis strain KACC 19629]
MSRPALSLRVSQQLALTPQLQQSIRLLQLSTLELAQEVEQMLADNPFLEHDDEAEATAPPGPVAEPLAASQHGSAEDGAD
AADAPSTPETAELPDAPERLEWEGEGAGESDWGLDGPGRSGASDAEGEFDALELASSHESLAEHLSRQALALHLSPEDAA
ALALLIGSLDDDGYLPDSLPELADSLLAGDPDPERREDVLHRLTVALGLLQSLEPAGVGARDLAECLTLQLREREREGSA
EPALVRVALAVCRQPLEWLARRDVRRLAHTCAASDEQTRTAIALIATLEPHPGRRFADVRRLVVVPDVIVRRSGSGTQQR
FAVQLNPEVMPRLRVHELYAGALRGHRGSEGHAQLQARLQEARWFIKNVQQRFDTILRVSDAIVQRQKNFFVHGELAMRP
LVLRDIAEELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIRQFVAAEDPAKPLSDSKIAD
LLKEQGIECARRTVAKYREALKIPTASLRKTL

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=638400 LVC68_RS01555 WP_209423117.1 310261..311799(+) (rpoN/rpoN1) [Melaminivora jejuensis strain KACC 19629]
ATGAGCCGCCCGGCGCTGTCGCTGCGCGTCTCCCAGCAACTGGCGCTCACGCCGCAGCTGCAGCAGTCCATCCGGCTGCT
GCAGCTGTCCACCCTGGAGCTGGCGCAGGAGGTCGAGCAGATGCTGGCCGACAACCCCTTCCTGGAGCACGACGACGAGG
CCGAGGCGACTGCCCCGCCCGGGCCAGTTGCCGAGCCCCTGGCTGCGTCCCAGCACGGCAGCGCCGAGGATGGCGCCGAC
GCCGCCGATGCGCCAAGCACGCCCGAGACCGCCGAGCTGCCCGATGCCCCCGAGCGCCTGGAGTGGGAGGGCGAGGGCGC
CGGCGAGAGTGACTGGGGCTTGGACGGCCCGGGCCGCAGCGGCGCCAGCGATGCCGAAGGCGAGTTCGACGCCCTGGAGT
TGGCCAGCAGCCACGAATCCCTGGCCGAGCACCTGAGCCGCCAGGCGCTGGCGCTGCACCTGTCGCCCGAGGACGCGGCG
GCGCTGGCGCTGCTGATCGGCTCGCTCGATGACGACGGCTATCTGCCGGACTCGCTGCCCGAGCTGGCCGACAGCCTGCT
GGCGGGCGACCCCGACCCCGAGCGGCGCGAGGACGTGCTGCACCGCCTGACCGTTGCCCTGGGCTTGCTGCAGAGCCTGG
AGCCCGCCGGCGTGGGCGCACGCGACCTGGCCGAGTGCCTGACGCTGCAACTGCGCGAGCGCGAGCGCGAGGGCAGCGCC
GAGCCGGCACTGGTGCGCGTGGCCCTGGCCGTGTGCCGCCAGCCGCTGGAGTGGCTGGCGCGGCGCGACGTGCGCCGCCT
GGCGCATACCTGCGCGGCCAGCGACGAGCAGACGCGCACCGCCATCGCCCTGATCGCCACCCTGGAGCCGCACCCGGGCC
GGCGCTTTGCCGACGTGCGCCGCCTGGTGGTCGTGCCCGACGTGATCGTGCGGCGCAGCGGCAGTGGCACGCAGCAGCGC
TTTGCCGTGCAGCTCAACCCCGAGGTCATGCCGCGCCTGCGCGTACACGAGCTGTATGCCGGCGCGCTGCGTGGCCACCG
GGGCAGCGAGGGCCATGCCCAGCTGCAGGCGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACGTGCAGCAGCGCTTTG
ACACCATCCTGCGCGTGTCCGACGCCATCGTGCAGCGGCAGAAGAATTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCG
CTGGTGCTGCGCGACATCGCCGAAGAGCTGGGCCTGCACGAGTCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGC
CACGCCGCAGGGCACCTACGAGCTGAAGTATTTCTTCGGCTCCGGCCTGGGCACGGAGACCGGCGGCAACGCATCGAGCA
CGGCGGTGCGGGCGCTGATCCGCCAGTTCGTTGCCGCCGAAGACCCGGCCAAGCCCCTGTCGGACAGCAAGATCGCCGAT
TTGCTCAAGGAGCAGGGCATCGAGTGCGCCCGCCGCACGGTGGCCAAATACCGCGAGGCGCTGAAGATCCCGACAGCCAG
CCTGCGCAAGACTCTTTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(354-510)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.682

100

0.537