Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LUM42_RS21050 Genome accession   NZ_CP089605
Coordinates   851475..852656 (+) Length   393 a.a.
NCBI ID   WP_014257352.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 846475..857656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS21035 (LUM42_21035) - 847274..848269 (-) 996 WP_014257350.1 CobW family GTP-binding protein -
  LUM42_RS21040 (LUM42_21040) clcA 848740..850137 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  LUM42_RS21045 (LUM42_21045) - 850298..851257 (+) 960 WP_004728184.1 TDT family transporter -
  LUM42_RS21050 (LUM42_21050) cqsA 851475..852656 (+) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LUM42_RS21055 (LUM42_21055) cqsS 852817..854868 (-) 2052 WP_158141878.1 response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43548.50 Da        Isoelectric Point: 6.8927

>NTDB_id=638376 LUM42_RS21050 WP_014257352.1 851475..852656(+) (cqsA) [Vibrio furnissii strain VFN3]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCHSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=638376 LUM42_RS21050 WP_014257352.1 851475..852656(+) (cqsA) [Vibrio furnissii strain VFN3]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCCATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCATGCCT
GTTGTCTCAGTCGGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTTTGTGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATTTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCGCTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTCGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGCAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAGGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCATTAACCAGTGCCGTTACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCACAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.312

97.964

0.669