Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL70_RS11140 Genome accession   NZ_CP106824
Coordinates   2107094..2107237 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102094..2112237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL70_RS11115 (NDL70_11115) pilA 2103164..2104417 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL70_RS11120 (NDL70_11120) - 2104839..2104979 (-) 141 WP_179133147.1 hypothetical protein -
  NDL70_RS11125 (NDL70_11125) - 2104993..2105805 (-) 813 WP_263059790.1 opacity family porin -
  NDL70_RS11995 - 2106212..2106725 (-) 514 Protein_2149 pilin -
  NDL70_RS11140 (NDL70_11140) pilE 2107094..2107237 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NDL70_RS11150 (NDL70_11150) pilE 2107540..2107956 (-) 417 WP_229940837.1 pilin Machinery gene
  NDL70_RS11155 (NDL70_11155) lpxC 2108062..2108985 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL70_RS12000 - 2109487..2110218 (-) 732 WP_406947483.1 pilin -
  NDL70_RS11175 (NDL70_11175) - 2110244..2110459 (-) 216 Protein_2154 pilin -
  NDL70_RS11180 (NDL70_11180) - 2110832..2110963 (-) 132 WP_010356054.1 hypothetical protein -
  NDL70_RS11185 (NDL70_11185) - 2111045..2111733 (-) 689 Protein_2156 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=638375 NDL70_RS11140 WP_012503975.1 2107094..2107237(-) (pilE) [Neisseria gonorrhoeae strain 9399]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=638375 NDL70_RS11140 WP_012503975.1 2107094..2107237(-) (pilE) [Neisseria gonorrhoeae strain 9399]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447