Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LUM42_RS14380 Genome accession   NZ_CP089603
Coordinates   3075329..3075961 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain VFN3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070329..3080961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS14360 (LUM42_14360) - 3072246..3072719 (+) 474 WP_004728586.1 TIGR02444 family protein -
  LUM42_RS14365 (LUM42_14365) - 3072847..3073824 (+) 978 WP_232658219.1 hydrolase -
  LUM42_RS14370 (LUM42_14370) - 3073913..3074122 (+) 210 WP_004728584.1 YheU family protein -
  LUM42_RS14375 (LUM42_14375) - 3074217..3075086 (+) 870 WP_004728583.1 phosphoribulokinase -
  LUM42_RS14380 (LUM42_14380) crp 3075329..3075961 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  LUM42_RS14385 (LUM42_14385) - 3076044..3076838 (-) 795 WP_055465827.1 DUF1338 domain-containing protein -
  LUM42_RS14390 (LUM42_14390) astD 3077022..3078479 (-) 1458 WP_232658220.1 succinylglutamate-semialdehyde dehydrogenase -
  LUM42_RS14395 (LUM42_14395) astA 3078513..3079532 (-) 1020 WP_004728579.1 arginine N-succinyltransferase -
  LUM42_RS14400 (LUM42_14400) - 3079632..3080843 (-) 1212 WP_004728578.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=638363 LUM42_RS14380 WP_004728582.1 3075329..3075961(+) (crp) [Vibrio furnissii strain VFN3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=638363 LUM42_RS14380 WP_004728582.1 3075329..3075961(+) (crp) [Vibrio furnissii strain VFN3]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTATCTGGTCAGATGGCTCGCCGTCTACAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGATGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467