Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LUM42_RS05230 Genome accession   NZ_CP089603
Coordinates   1119603..1121843 (+) Length   746 a.a.
NCBI ID   WP_232658594.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1114603..1126843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS05205 (LUM42_05205) - 1115049..1115618 (-) 570 WP_232658592.1 PilZ domain-containing protein -
  LUM42_RS05210 (LUM42_05210) lolC 1115794..1117002 (+) 1209 WP_232658593.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  LUM42_RS05215 (LUM42_05215) lolD 1116995..1117681 (+) 687 WP_158165099.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LUM42_RS05220 (LUM42_05220) lolE 1117682..1118926 (+) 1245 WP_154180978.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  LUM42_RS05225 (LUM42_05225) - 1119064..1119594 (-) 531 WP_004726453.1 DUF2062 domain-containing protein -
  LUM42_RS05230 (LUM42_05230) comEC 1119603..1121843 (+) 2241 WP_232658594.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUM42_RS05235 (LUM42_05235) msbA 1121876..1123624 (+) 1749 WP_004726451.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LUM42_RS05240 (LUM42_05240) lpxK 1123628..1124635 (+) 1008 WP_232658595.1 tetraacyldisaccharide 4'-kinase -
  LUM42_RS05245 (LUM42_05245) - 1124616..1124795 (+) 180 WP_004726449.1 Trm112 family protein -
  LUM42_RS05250 (LUM42_05250) kdsB 1124795..1125538 (+) 744 WP_004726448.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 83194.79 Da        Isoelectric Point: 9.5368

>NTDB_id=638352 LUM42_RS05230 WP_232658594.1 1119603..1121843(+) (comEC) [Vibrio furnissii strain VFN3]
MTLYSNYWMLISFSLTVLSAPYWPRMPSWGFAFICLVALMGTVLFTRLRGWGGIAFAVLVIVTHGNAMRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGNEGSIVVRSINGQQLPTFRQPIVRLVAPIALHIGDQVTFSVTVKPIYGRLNETGFDIEAYYL
SQGWVARATVKPQSAFSVVSRPSWRDTLHQKIQIATQHLQAQGMILALTFGDRNGIQEDDWRALRDSGLIHLVAISGLHI
GMAFAVGYLLGSALMRIHVNALWLPWIVGLLMATVYAWLAGFTLPTQRALLMCTLNVLLTMSGWRITAVQRILLTLGALL
LVSPFAPLSMSFWLSFLAVAVVLYQLASRSSTQRGWRQLVMTQCTLVLLMTPISALFFSGFSLSSALYNLVFIPWFSVVI
VPLLFLGLVLTSLFEQVDWIWTLIDLSFWPLSQALTLSESSWVAVSHATTFVLCAGGIGWVLRPLLSRDARIAVVLLALG
MWEFNSPKDRWRIDVLDVGHGLAVLIERQQRVLLYDTGSGWPDGSYVRSLVVPLLHQRGVHQLDGLIISHMDSDHAGGLA
DAQQWLSPSWILASQRQPQWRTCVAGQQWDWQGLRLQALWPPKTVSRAHNVHSCVLRLSDPEYGHSVLLAGDVTAVGEWL
LSRQATDIKSDIMIVPHHGSKTSSTARFIEHVAPQVAIASLAKGNQWHLPDQDVVQRYQATGAKWLDTGEAGQITLSYRA
ETRLLSTLRQSGYPPWYRQMLRKGVE

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=638352 LUM42_RS05230 WP_232658594.1 1119603..1121843(+) (comEC) [Vibrio furnissii strain VFN3]
ATGACTCTCTATTCGAATTATTGGATGCTCATTTCGTTCTCGCTCACCGTCTTGTCTGCACCCTATTGGCCGCGGATGCC
AAGTTGGGGTTTTGCATTCATTTGCCTTGTCGCTCTGATGGGCACCGTATTATTCACTCGGCTCAGAGGATGGGGCGGGA
TCGCGTTTGCCGTGTTAGTGATAGTAACACATGGCAACGCAATGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAGGTTGACAGCTTTTTTAAGCAAATAAGTTACGGGAATGAAGGCAGTATCGTGGTGAGATC
AATTAACGGTCAACAATTGCCCACCTTTCGTCAGCCGATTGTCCGATTAGTCGCGCCCATTGCACTCCATATCGGCGATC
AGGTGACGTTTTCAGTCACGGTGAAACCGATTTATGGACGCCTCAATGAAACCGGATTTGATATAGAAGCATACTATCTC
AGCCAAGGTTGGGTTGCTCGCGCGACCGTCAAACCGCAGTCGGCGTTTTCGGTCGTCTCTCGACCCAGCTGGCGGGACAC
TTTGCACCAAAAAATCCAAATTGCTACGCAACATCTCCAAGCTCAAGGCATGATTTTGGCGCTGACGTTTGGCGACCGCA
ATGGCATTCAGGAAGATGACTGGCGCGCGCTTCGCGACAGCGGATTAATCCATTTGGTTGCGATATCTGGATTGCACATC
GGCATGGCTTTCGCTGTGGGTTATTTGTTGGGAAGCGCGTTGATGCGCATCCACGTGAACGCGCTGTGGCTGCCATGGAT
CGTCGGTCTGCTGATGGCCACGGTGTACGCGTGGCTGGCTGGATTTACCTTGCCGACACAGCGCGCGTTGCTCATGTGTA
CGCTGAATGTGCTATTGACCATGAGCGGGTGGCGCATCACGGCTGTGCAGCGCATTCTGTTGACACTGGGCGCGTTGCTG
CTGGTGTCACCATTTGCGCCGCTGTCGATGAGTTTTTGGTTGTCGTTCTTGGCCGTCGCGGTCGTGTTGTATCAACTTGC
GAGTCGCTCATCGACACAACGTGGGTGGCGACAGCTTGTCATGACACAGTGCACGTTGGTTCTATTGATGACGCCGATCT
CTGCGCTGTTTTTCTCTGGTTTTAGCCTATCGTCGGCGCTCTACAACTTGGTGTTTATTCCGTGGTTCAGTGTGGTGATT
GTGCCGCTGCTGTTCTTGGGGTTGGTCTTGACGTCGTTGTTTGAGCAAGTCGATTGGATATGGACGCTGATTGATCTCAG
CTTTTGGCCTTTGAGCCAGGCATTAACACTCTCTGAATCTAGTTGGGTGGCAGTCAGCCATGCCACCACGTTCGTGTTGT
GCGCTGGCGGGATCGGTTGGGTGCTGCGTCCATTGCTGAGTCGCGATGCACGAATTGCTGTGGTACTACTCGCGCTTGGC
ATGTGGGAGTTCAATTCGCCCAAGGATCGCTGGCGCATTGATGTGCTTGATGTCGGCCATGGTCTGGCGGTGCTGATTGA
GCGCCAGCAGCGCGTGTTGCTCTACGATACCGGAAGTGGTTGGCCTGATGGCAGTTACGTGCGCTCACTGGTGGTGCCAC
TGCTCCATCAACGTGGCGTGCATCAACTGGATGGCTTGATTATCAGTCATATGGATAGCGATCATGCAGGCGGTTTGGCG
GATGCGCAGCAATGGTTGTCTCCGTCATGGATACTGGCCAGTCAACGTCAGCCCCAATGGCGAACGTGTGTTGCAGGGCA
ACAATGGGATTGGCAGGGGCTGAGATTACAGGCGTTGTGGCCGCCGAAAACGGTCTCTCGCGCACACAATGTGCACTCCT
GCGTGCTGAGGCTCAGCGATCCTGAATATGGTCATTCCGTGTTGTTGGCTGGCGATGTGACGGCAGTCGGTGAGTGGTTA
CTCAGTCGCCAAGCCACAGATATCAAGAGCGATATCATGATTGTGCCGCATCATGGTAGTAAAACTTCCTCGACCGCTCG
CTTTATCGAACACGTGGCACCGCAGGTGGCCATCGCCTCGCTAGCCAAAGGCAATCAATGGCATCTGCCCGATCAAGACG
TGGTTCAACGCTATCAAGCGACTGGGGCAAAGTGGCTAGATACGGGGGAGGCGGGGCAAATCACCCTCAGCTATCGCGCA
GAAACTCGTCTATTATCAACATTGCGCCAGTCAGGATATCCCCCTTGGTATAGGCAGATGCTACGTAAAGGGGTAGAATG
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(208-462)

Domain of unknown function (DUF4131) (DUF4131)

(27-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

54.642

100

0.552
  comEC Vibrio campbellii strain DS40M4

42.876

100

0.436
  comEC Vibrio parahaemolyticus RIMD 2210633

42.424

100

0.432