Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NDL70_RS02360 Genome accession   NZ_CP106824
Coordinates   454418..454891 (+) Length   157 a.a.
NCBI ID   WP_229940840.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9399     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449418..459891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL70_RS02335 (NDL70_02335) dnaB 450002..451408 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDL70_RS02340 (NDL70_02340) pilH 451562..452227 (+) 666 WP_229940797.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL70_RS02345 (NDL70_02345) pilV 452259..452870 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDL70_RS02350 (NDL70_02350) pilJ 452867..453826 (+) 960 WP_229940798.1 PilW family protein Machinery gene
  NDL70_RS02355 (NDL70_02355) pilK 453805..454416 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDL70_RS02360 (NDL70_02360) pilL 454418..454891 (+) 474 WP_229940840.1 PilX family type IV pilin Machinery gene
  NDL70_RS02365 (NDL70_02365) - 454961..455269 (-) 309 WP_025456177.1 AzlD family protein -
  NDL70_RS02370 (NDL70_02370) - 455266..455976 (-) 711 Protein_465 AzlC family ABC transporter permease -
  NDL70_RS02375 (NDL70_02375) dut 456142..456594 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDL70_RS02380 (NDL70_02380) dapC 456670..457857 (+) 1188 WP_229931672.1 succinyldiaminopimelate transaminase -
  NDL70_RS02385 (NDL70_02385) yaaA 458013..458792 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17399.22 Da        Isoelectric Point: 9.7225

>NTDB_id=638330 NDL70_RS02360 WP_229940840.1 454418..454891(+) (pilL) [Neisseria gonorrhoeae strain 9399]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQGYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=638330 NDL70_RS02360 WP_229940840.1 454418..454891(+) (pilL) [Neisseria gonorrhoeae strain 9399]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAGGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(32-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

90.446

100

0.904
  pilX Neisseria meningitidis 8013

87.898

100

0.879