Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LUU82_RS02655 Genome accession   NZ_CP089586
Coordinates   476437..476883 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1185_IV_ST12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471437..481883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUU82_RS02620 (LUU82_02620) - 471931..472134 (+) 204 WP_000087561.1 YqgQ family protein -
  LUU82_RS02625 (LUU82_02625) - 472131..473117 (+) 987 WP_000161314.1 ROK family glucokinase -
  LUU82_RS02630 (LUU82_02630) - 473117..473446 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUU82_RS02635 (LUU82_02635) - 473443..474066 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUU82_RS02640 (LUU82_02640) comGA 474118..475092 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LUU82_RS02645 (LUU82_02645) comGB 475064..476134 (+) 1071 Protein_490 competence type IV pilus assembly protein ComGB -
  LUU82_RS02650 (LUU82_02650) comGC 476148..476459 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUU82_RS02655 (LUU82_02655) comGD 476437..476883 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUU82_RS02660 (LUU82_02660) comGE 476870..477169 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUU82_RS02665 (LUU82_02665) comGF 477087..477584 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUU82_RS02670 (LUU82_02670) - 477681..477827 (+) 147 WP_072399793.1 hypothetical protein -
  LUU82_RS02675 (LUU82_02675) - 477817..478341 (+) 525 WP_001015120.1 shikimate kinase -
  LUU82_RS02680 (LUU82_02680) gcvT 478500..479591 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LUU82_RS02685 (LUU82_02685) gcvPA 479611..480957 (+) 1347 WP_000019694.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=638136 LUU82_RS02655 WP_001788899.1 476437..476883(+) (comGD) [Staphylococcus aureus strain E1185_IV_ST12]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=638136 LUU82_RS02655 WP_001788899.1 476437..476883(+) (comGD) [Staphylococcus aureus strain E1185_IV_ST12]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1