Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LQ249_RS02970 Genome accession   NZ_CP089551
Coordinates   688555..689880 (+) Length   441 a.a.
NCBI ID   WP_232566598.1    Uniprot ID   -
Organism   Pseudomonas sp. 7-41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683555..694880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ249_RS02950 (LQ249_02950) - 683630..686095 (-) 2466 WP_046384970.1 penicillin-binding protein 1A -
  LQ249_RS02955 (LQ249_02955) pilM 686313..686966 (+) 654 WP_046385359.1 type IV pilus assembly protein PilM -
  LQ249_RS02960 (LQ249_02960) - 686963..687517 (+) 555 WP_232566180.1 PilN domain-containing protein -
  LQ249_RS02965 (LQ249_02965) - 687514..688485 (+) 972 WP_057003634.1 pilus assembly protein PilP -
  LQ249_RS02970 (LQ249_02970) pilQ 688555..689880 (+) 1326 WP_232566598.1 type IV pilus secretin PilQ family protein Machinery gene
  LQ249_RS02975 (LQ249_02975) aroK 689885..690403 (+) 519 WP_026140392.1 shikimate kinase AroK -
  LQ249_RS02980 (LQ249_02980) aroB 690529..691629 (+) 1101 WP_017849857.1 3-dehydroquinate synthase -
  LQ249_RS02985 (LQ249_02985) - 691640..693214 (+) 1575 WP_232566181.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47946.76 Da        Isoelectric Point: 4.7205

>NTDB_id=638084 LQ249_RS02970 WP_232566598.1 688555..689880(+) (pilQ) [Pseudomonas sp. 7-41]
MAAAVPNRVDLIQLPPPGGAASGTYTGDKLNLNFQNIELRAVLQQIADVAGLNLVASDDVQGSITLRLKDVPWDQALDLV
LQSKGLDQRIKAGVLLVAPADELASRELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVTGLEGATDERGSVAV
DDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKRLGVRWGGRINRGNWGAGGVEKPPEPGTEPVE
NPSGSPFVDLGALTNTSGLGIAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVRDGETIVIGGVFSNTQSKVLDKVPF
LGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=638084 LQ249_RS02970 WP_232566598.1 688555..689880(+) (pilQ) [Pseudomonas sp. 7-41]
ATGGCTGCTGCTGTGCCCAATCGTGTGGATCTGATCCAGCTGCCGCCTCCCGGCGGTGCGGCATCAGGTACCTATACCGG
TGACAAGCTGAACCTCAACTTCCAGAACATCGAGCTGCGCGCCGTGTTGCAGCAGATTGCCGATGTGGCGGGCCTGAATC
TGGTCGCCAGCGACGATGTGCAAGGTTCGATCACCCTGCGGCTTAAGGACGTGCCTTGGGACCAGGCGCTGGACCTGGTG
TTGCAAAGCAAGGGGCTGGACCAGCGGATAAAGGCCGGGGTGCTGTTGGTGGCGCCCGCCGACGAGTTGGCCTCGCGCGA
GCTGCTGACGCTGGAGTCGCGCAAGCAGATGGCTGAACTGGCGCCATTGCGGCGCGAACTGTTGCAGGTCAATTACGCCA
AGGCTGCGGACCTGGCCAAGTTGTTCCAATCGGTGACCGGCCTGGAAGGCGCCACCGACGAACGCGGCTCGGTGGCGGTG
GATGACCGCACCAACAACATCATCGCCTACCAGACCGGCGAACGCCTGGAAGAGCTGCGACGCATCGTGGCGCAGCTGGA
TATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTCGAGGCCAATGTCGACTACGACAAACGCCTGGGCGTGCGCT
GGGGAGGGCGGATCAATCGCGGTAACTGGGGCGCCGGCGGTGTCGAGAAACCTCCGGAGCCAGGCACCGAGCCTGTGGAA
AACCCGTCCGGCTCGCCCTTTGTCGACTTGGGGGCGCTCACTAACACCTCCGGGCTGGGGATCGCGTTTATCACCGACAA
CCTGCTGCTGGACCTGGAACTGACCGCGATGGAAAAAACCGGCAACGGCGAGATTGTCTCGCAGCCCAAGGTGGTCACGT
CCGACAAGGAGACCGCGCGCATCCTCAAGGGCACCGAGATTCCCTACCAGGAGTCCAGCTCCAGCGGCGCCACCTCGGTG
TCGTTCAAGGAGGCTTCGCTGTCCCTGGAAGTCACCCCGCAAATCACCCCCGACGACCGCGTGATCATGGAGGTCAAAGT
CACCAAGGATGAGCCGGATTACCTGAACAAGCTCAACGACGTACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGGTGC
TGGTCAGGGACGGCGAGACCATCGTCATCGGCGGAGTTTTCTCCAATACCCAAAGCAAAGTGCTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCAGAAAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Secretin and TonB N terminus short domain (STN)

(53-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.477

98.866

0.717
  comQ Acinetobacter baylyi ADP1

43.584

100

0.447
  pilQ Acinetobacter baumannii strain A118

40.605

100

0.426
  pilQ Acinetobacter baumannii D1279779

40.605

100

0.426
  pilQ Legionella pneumophila strain ERS1305867

44.076

95.692

0.422
  pilQ Legionella pneumophila strain Lp02

44.076

95.692

0.422
  pilQ Vibrio campbellii strain DS40M4

43.735

95.918

0.419
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.301

94.785

0.41
  pilQ Vibrio cholerae strain A1552

43.301

94.785

0.41
  pilQ Neisseria meningitidis M1080

35.948

100

0.374
  pilQ Neisseria meningitidis MC58

35.948

100

0.374
  pilQ Neisseria gonorrhoeae strain FA1090

35.421

100

0.372