Detailed information NTG0638079

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: OCL41_RS09255
• Genome accession: NZ_CP106815
• Coordinates: 1761722..1762306 (+)
• Length: 194 a.a.
• NCBI ID: WP_003689924.1
• Uniprot ID: Q5F636
• Organism: Neisseria gonorrhoeae strain 10562
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1756722..1767306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCL41_RS09220 (OCL41_09220)	-	1757471..1757581 (+)	111	Protein_1788	IS5/IS1182 family transposase	-
OCL41_RS09225 (OCL41_09225)	-	1757662..1758450 (-)	789	WP_003697625.1	class I SAM-dependent methyltransferase	-
OCL41_RS09230 (OCL41_09230)	bioH	1758447..1759196 (-)	750	WP_010359261.1	pimeloyl-ACP methyl ester esterase BioH	-
OCL41_RS09235 (OCL41_09235)	-	1759195..1759910 (+)	716	Protein_1791	ComF family protein	-
OCL41_RS09240 (OCL41_09240)	trmL	1759975..1760439 (+)	465	WP_003689916.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
OCL41_RS09245 (OCL41_09245)	-	1760567..1761253 (+)	687	WP_003689919.1	septal ring lytic transglycosylase RlpA family protein	-
OCL41_RS09250 (OCL41_09250)	-	1761314..1761640 (+)	327	WP_003689921.1	PepSY domain-containing protein	-
OCL41_RS09255 (OCL41_09255)	ruvA	1761722..1762306 (+)	585	WP_003689924.1	Holliday junction branch migration protein RuvA	Machinery gene
OCL41_RS09260 (OCL41_09260)	-	1762306..1762443 (+)	138	WP_003689926.1	hypothetical protein	-
OCL41_RS09265 (OCL41_09265)	-	1762470..1764326 (+)	1857	WP_003700518.1	ABC transporter ATP-binding protein	-
OCL41_RS09270 (OCL41_09270)	rsgA	1764331..1765254 (+)	924	WP_003689928.1	ribosome small subunit-dependent GTPase A	-
OCL41_RS09275 (OCL41_09275)	-	1765367..1765591 (+)	225	WP_003689929.1	exodeoxyribonuclease VII small subunit	-
OCL41_RS09280 (OCL41_09280)	-	1765575..1766471 (+)	897	WP_003691917.1	polyprenyl synthetase family protein	-
OCL41_RS09285 (OCL41_09285)	-	1766588..1766887 (-)	300	WP_010359269.1	DUF2818 family protein	-

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 20729.99 Da
• Isoelectric Point: 6.4967

>NTDB_id=638079 OCL41_RS09255 WP_003689924.1 1761722..1762306(+) (ruvA) [Neisseria gonorrhoeae strain 10562]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAASPAADETEDIVSTLLA
LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide

• Length: 585 bp

>NTDB_id=638079 OCL41_RS09255 WP_003689924.1 1761722..1762306(+) (ruvA) [Neisseria gonorrhoeae strain 10562]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA
AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT
CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (72-129)

• RuvA N terminal domain (RuvA_N) (1-62)

• RuvA, C-terminal domain (RuvA_C) (150-192)

3D structure

• AlphaFold DB: Q5F636

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae R6	38	100	0.392
ruvA	Streptococcus pneumoniae D39	38	100	0.392
ruvA	Streptococcus pneumoniae TIGR4	37.5	100	0.387
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.951	100	0.371