Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LUW10_RS18230 Genome accession   NZ_CP089532
Coordinates   4078956..4081169 (-) Length   737 a.a.
NCBI ID   WP_232589403.1    Uniprot ID   -
Organism   Pseudomonas veronii strain G2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4073956..4086169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW10_RS18195 (LUW10_18195) murB 4074326..4075345 (-) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -
  LUW10_RS18200 (LUW10_18200) - 4075342..4075806 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  LUW10_RS18205 (LUW10_18205) kdsB 4075806..4076570 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LUW10_RS18210 (LUW10_18210) - 4076567..4076752 (-) 186 WP_003174668.1 Trm112 family protein -
  LUW10_RS18215 (LUW10_18215) lpxK 4076776..4077786 (-) 1011 WP_126585729.1 tetraacyldisaccharide 4'-kinase -
  LUW10_RS18220 (LUW10_18220) - 4077786..4078214 (-) 429 WP_017848013.1 ExbD/TolR family protein -
  LUW10_RS18225 (LUW10_18225) exbB 4078211..4078846 (-) 636 WP_017848014.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LUW10_RS18230 (LUW10_18230) comA 4078956..4081169 (-) 2214 WP_232589403.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUW10_RS18235 (LUW10_18235) - 4081317..4081832 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  LUW10_RS18240 (LUW10_18240) - 4081836..4083206 (-) 1371 WP_169883883.1 sensor histidine kinase -
  LUW10_RS18245 (LUW10_18245) - 4083193..4083921 (-) 729 WP_057004412.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79872.69 Da        Isoelectric Point: 10.1353

>NTDB_id=638022 LUW10_RS18230 WP_232589403.1 4078956..4081169(-) (comA) [Pseudomonas veronii strain G2]
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPMLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAVVA
RGLPIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGTQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=638022 LUW10_RS18230 WP_232589403.1 4078956..4081169(-) (comA) [Pseudomonas veronii strain G2]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCTTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGATGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GGCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAACGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGTTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTACGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGGCGCTGGAGTGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTACTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGTTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAACTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTTGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGTTGTCGCC
CGTGGACTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAAGTGGTGG
AGCGCTATCAAGCGTTGGGAACGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTTGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Competence protein (Competence)

(194-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.918

97.558

0.594
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372