Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LUW10_RS18225 Genome accession   NZ_CP089532
Coordinates   4078211..4078846 (-) Length   211 a.a.
NCBI ID   WP_017848014.1    Uniprot ID   A0A1D3JW30
Organism   Pseudomonas veronii strain G2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4073211..4083846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW10_RS18190 (LUW10_18190) - 4073580..4074251 (+) 672 WP_057004407.1 Bax inhibitor-1/YccA family protein -
  LUW10_RS18195 (LUW10_18195) murB 4074326..4075345 (-) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -
  LUW10_RS18200 (LUW10_18200) - 4075342..4075806 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  LUW10_RS18205 (LUW10_18205) kdsB 4075806..4076570 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LUW10_RS18210 (LUW10_18210) - 4076567..4076752 (-) 186 WP_003174668.1 Trm112 family protein -
  LUW10_RS18215 (LUW10_18215) lpxK 4076776..4077786 (-) 1011 WP_126585729.1 tetraacyldisaccharide 4'-kinase -
  LUW10_RS18220 (LUW10_18220) - 4077786..4078214 (-) 429 WP_017848013.1 ExbD/TolR family protein -
  LUW10_RS18225 (LUW10_18225) exbB 4078211..4078846 (-) 636 WP_017848014.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LUW10_RS18230 (LUW10_18230) comA 4078956..4081169 (-) 2214 WP_232589403.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUW10_RS18235 (LUW10_18235) - 4081317..4081832 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  LUW10_RS18240 (LUW10_18240) - 4081836..4083206 (-) 1371 WP_169883883.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.02 Da        Isoelectric Point: 7.3613

>NTDB_id=638021 LUW10_RS18225 WP_017848014.1 4078211..4078846(-) (exbB) [Pseudomonas veronii strain G2]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=638021 LUW10_RS18225 WP_017848014.1 4078211..4078846(-) (exbB) [Pseudomonas veronii strain G2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACGCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAGCTGCGTGCCAATTCACCCCTGGGTGAAATCCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCGCGGGTCATCCATGAGCTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCGCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGGATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3JW30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848