Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LUA14_RS19485 Genome accession   NZ_CP089530
Coordinates   3849142..3849261 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3844142..3854261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS19465 (LUA14_19465) - 3844492..3845004 (+) 513 Protein_3798 bacteriocin biosynthesis protein AlbG -
  LUA14_RS19470 (LUA14_19470) - 3845011..3846387 (-) 1377 WP_046702210.1 YncE family protein -
  LUA14_RS19475 (LUA14_19475) - 3846427..3847782 (-) 1356 WP_015240776.1 YncE family protein -
  LUA14_RS19480 (LUA14_19480) rapF 3848013..3849158 (+) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  LUA14_RS19485 (LUA14_19485) phrF 3849142..3849261 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LUA14_RS19490 (LUA14_19490) - 3849459..3849662 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LUA14_RS19495 (LUA14_19495) - 3849676..3849879 (+) 204 WP_007407641.1 hypothetical protein -
  LUA14_RS19500 (LUA14_19500) - 3849914..3850099 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LUA14_RS19505 (LUA14_19505) - 3850285..3850566 (+) 282 WP_007407643.1 hypothetical protein -
  LUA14_RS19510 (LUA14_19510) - 3850610..3851122 (+) 513 WP_031304384.1 stage II sporulation protein M -
  LUA14_RS19515 (LUA14_19515) - 3851713..3851931 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LUA14_RS19520 (LUA14_19520) speB 3852099..3852971 (-) 873 WP_095352572.1 agmatinase -
  LUA14_RS19525 (LUA14_19525) speE 3853030..3853860 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=638010 LUA14_RS19485 WP_015240778.1 3849142..3849261(+) (phrF) [Bacillus amyloliquefaciens strain LS1-002-014s]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=638010 LUA14_RS19485 WP_015240778.1 3849142..3849261(+) (phrF) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462