NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	LUA14_RS14035	Genome accession	NZ_CP089530
Coordinates	2791811..2792425 (-)	Length	204 a.a.
NCBI ID	WP_015240245.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain LS1-002-014s
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2786811..2797425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUA14_RS14005 (LUA14_14005)	rpsT	2787114..2787380 (+)	267	WP_003152876.1	30S ribosomal protein S20	-
LUA14_RS14010 (LUA14_14010)	holA	2787397..2788438 (-)	1042	Protein_2728	DNA polymerase III subunit delta	-
LUA14_RS14015 (LUA14_14015)	-	2788478..2788629 (-)	152	Protein_2729	hypothetical protein	-
LUA14_RS14020 (LUA14_14020)	-	2788670..2788804 (+)	135	WP_003152870.1	YqzM family protein	-
LUA14_RS14025 (LUA14_14025)	comEC	2788823..2791174 (-)	2352	WP_015240244.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LUA14_RS14030 (LUA14_14030)	-	2791175..2791744 (-)	570	WP_003152868.1	ComE operon protein 2	-
LUA14_RS14035 (LUA14_14035)	comEA	2791811..2792425 (-)	615	WP_015240245.1	helix-hairpin-helix domain-containing protein	Machinery gene
LUA14_RS14040 (LUA14_14040)	comER	2792484..2793305 (+)	822	WP_015240246.1	late competence protein ComER	-
LUA14_RS14045 (LUA14_14045)	-	2793374..2794111 (-)	738	WP_015240247.1	class I SAM-dependent DNA methyltransferase	-
LUA14_RS14050 (LUA14_14050)	rsfS	2794108..2794464 (-)	357	WP_007408260.1	ribosome silencing factor	-
LUA14_RS14055 (LUA14_14055)	yqeK	2794482..2795042 (-)	561	WP_014418422.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
LUA14_RS14060 (LUA14_14060)	-	2795032..2795601 (-)	570	WP_007408258.1	nicotinate-nucleotide adenylyltransferase	-
LUA14_RS14065 (LUA14_14065)	yhbY	2795612..2795902 (-)	291	WP_007408257.1	ribosome assembly RNA-binding protein YhbY	-
LUA14_RS14070 (LUA14_14070)	aroE	2795896..2796738 (-)	843	WP_015240248.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 204 a.a. Molecular weight: 22209.32 Da Isoelectric Point: 5.5211

                                >NTDB_id=637988 LUA14_RS14035 WP_015240245.1 2791811..2792425(-) (comEA) [Bacillus amyloliquefaciens strain LS1-002-014s]

MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY

EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG

QKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide

Download Length: 615 bp

                                >NTDB_id=637988 LUA14_RS14035 WP_015240245.1 2791811..2792425(-) (comEA) [Bacillus amyloliquefaciens strain LS1-002-014s]

ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT

TATCTGTATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCTGTGCTCGGCCAAACAGCCTCAGCAT

CCGTCGCGGACAAAAAAGACACAGCAGACGATAAGATTATGATTGATGTGAAAGGTGCGGTCCGGAATCCCGGCGTGTAT

GAAATGAAAGCGGGAGACAGAGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAATGT

TAATTTAGCAGAGCAGCTGCAGGACGGCACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG

CGGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCAATTTCCGGGGTGGGG

CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAACGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC

AGGCTTTGGAGAGAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Bacillus subtilis subsp. subtilis str. 168	58.854	94.118	0.554
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	35.545	100	0.368
comEA/celA/cilE	Streptococcus mitis SK321	35.071	100	0.363

Detailed information NTG0637988