Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LUA14_RS13600 Genome accession   NZ_CP089530
Coordinates   2713970..2714278 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2708970..2719278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS13550 (LUA14_13550) sinR 2709134..2709469 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LUA14_RS13555 (LUA14_13555) tasA 2709517..2710302 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LUA14_RS13560 (LUA14_13560) sipW 2710367..2710951 (-) 585 WP_015240205.1 signal peptidase I SipW -
  LUA14_RS13565 (LUA14_13565) tapA 2710923..2711594 (-) 672 WP_124692843.1 amyloid fiber anchoring/assembly protein TapA -
  LUA14_RS13570 (LUA14_13570) - 2711853..2712182 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  LUA14_RS13575 (LUA14_13575) - 2712222..2712401 (-) 180 WP_003153093.1 YqzE family protein -
  LUA14_RS13580 (LUA14_13580) comGG 2712458..2712835 (-) 378 WP_015240208.1 competence type IV pilus minor pilin ComGG Machinery gene
  LUA14_RS13585 (LUA14_13585) comGF 2712836..2713336 (-) 501 WP_256994853.1 competence type IV pilus minor pilin ComGF -
  LUA14_RS13590 (LUA14_13590) comGE 2713245..2713559 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  LUA14_RS13595 (LUA14_13595) comGD 2713543..2713980 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUA14_RS13600 (LUA14_13600) comGC 2713970..2714278 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LUA14_RS13605 (LUA14_13605) comGB 2714283..2715320 (-) 1038 WP_218791295.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUA14_RS13610 (LUA14_13610) comGA 2715307..2716377 (-) 1071 WP_124692840.1 competence type IV pilus ATPase ComGA Machinery gene
  LUA14_RS13615 (LUA14_13615) - 2716570..2717520 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  LUA14_RS13620 (LUA14_13620) - 2717666..2718967 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=637982 LUA14_RS13600 WP_003153087.1 2713970..2714278(-) (comGC) [Bacillus amyloliquefaciens strain LS1-002-014s]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=637982 LUA14_RS13600 WP_003153087.1 2713970..2714278(-) (comGC) [Bacillus amyloliquefaciens strain LS1-002-014s]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402