Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LUA14_RS13605 Genome accession   NZ_CP089530
Coordinates   2714283..2715320 (-) Length   345 a.a.
NCBI ID   WP_218791295.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2709283..2720320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS13555 (LUA14_13555) tasA 2709517..2710302 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LUA14_RS13560 (LUA14_13560) sipW 2710367..2710951 (-) 585 WP_015240205.1 signal peptidase I SipW -
  LUA14_RS13565 (LUA14_13565) tapA 2710923..2711594 (-) 672 WP_124692843.1 amyloid fiber anchoring/assembly protein TapA -
  LUA14_RS13570 (LUA14_13570) - 2711853..2712182 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  LUA14_RS13575 (LUA14_13575) - 2712222..2712401 (-) 180 WP_003153093.1 YqzE family protein -
  LUA14_RS13580 (LUA14_13580) comGG 2712458..2712835 (-) 378 WP_015240208.1 competence type IV pilus minor pilin ComGG Machinery gene
  LUA14_RS13585 (LUA14_13585) comGF 2712836..2713336 (-) 501 WP_256994853.1 competence type IV pilus minor pilin ComGF -
  LUA14_RS13590 (LUA14_13590) comGE 2713245..2713559 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  LUA14_RS13595 (LUA14_13595) comGD 2713543..2713980 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUA14_RS13600 (LUA14_13600) comGC 2713970..2714278 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LUA14_RS13605 (LUA14_13605) comGB 2714283..2715320 (-) 1038 WP_218791295.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUA14_RS13610 (LUA14_13610) comGA 2715307..2716377 (-) 1071 WP_124692840.1 competence type IV pilus ATPase ComGA Machinery gene
  LUA14_RS13615 (LUA14_13615) - 2716570..2717520 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  LUA14_RS13620 (LUA14_13620) - 2717666..2718967 (+) 1302 WP_012117986.1 hemolysin family protein -
  LUA14_RS13625 (LUA14_13625) - 2719005..2719835 (-) 831 WP_007408317.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39501.78 Da        Isoelectric Point: 9.5935

>NTDB_id=637983 LUA14_RS13605 WP_218791295.1 2714283..2715320(-) (comGB) [Bacillus amyloliquefaciens strain LS1-002-014s]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQTLIIPQFSGIYQSMNMNTSGATAFIFAFF
GHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=637983 LUA14_RS13605 WP_218791295.1 2714283..2715320(-) (comGB) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAAGCGGATTAAACGAACCTGGCCCTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACAGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGGCTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTTATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGCGTCATGTTTTATATCCTGCAAACTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
GGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTATGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614