Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LUU92_RS17070 Genome accession   NZ_CP089519
Coordinates   3829497..3831722 (-) Length   741 a.a.
NCBI ID   WP_257102383.1    Uniprot ID   -
Organism   Pseudomonas extremorientalis strain 1502IPR-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3824497..3836722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUU92_RS17035 (LUU92_17005) murB 3824892..3825911 (-) 1020 WP_257102380.1 UDP-N-acetylmuramate dehydrogenase -
  LUU92_RS17040 (LUU92_17010) - 3825908..3826372 (-) 465 WP_257102381.1 low molecular weight protein-tyrosine-phosphatase -
  LUU92_RS17045 (LUU92_17015) kdsB 3826372..3827136 (-) 765 WP_257102382.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LUU92_RS17050 (LUU92_17020) - 3827133..3827318 (-) 186 WP_003174668.1 Trm112 family protein -
  LUU92_RS17055 (LUU92_17025) lpxK 3827343..3828353 (-) 1011 WP_071491865.1 tetraacyldisaccharide 4'-kinase -
  LUU92_RS17060 (LUU92_17030) - 3828353..3828781 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  LUU92_RS17065 (LUU92_17035) exbB 3828778..3829413 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LUU92_RS17070 (LUU92_17040) comA 3829497..3831722 (-) 2226 WP_257102383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUU92_RS17075 (LUU92_17045) - 3831858..3832373 (+) 516 WP_071491867.1 DUF2062 domain-containing protein -
  LUU92_RS17080 (LUU92_17050) - 3832370..3833740 (-) 1371 WP_257102384.1 sensor histidine kinase -
  LUU92_RS17085 (LUU92_17055) - 3833727..3834455 (-) 729 WP_222541569.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80789.90 Da        Isoelectric Point: 10.9243

>NTDB_id=637918 LUU92_RS17070 WP_257102383.1 3829497..3831722(-) (comA) [Pseudomonas extremorientalis strain 1502IPR-01]
MKTGMCAFALGLLALRFLPALPPMGWLVAWPVLALMLLPFRTYPLAFFLLGLSWACLSAQWALDDRLMPALDGQTRWLEG
RVIGLPRQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVRSGERWRLAVTLKRPTGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARNAWRDSVRQRLLAVDAQGREAGLVALVLGDGSGLAAADWHVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGWLAGFGVPVQRACVMVGLVLVWRLRFRHLGLWWPLLLALNGVLMLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
SGTALLPLPFIGEGLLWLAGGALDGLFRGLAWLAGHMPAWIPAQVPLVYWLVSLLGAVLLLLPNGVPFRVLGWSMLLLAV
FPARELVPHGQMEVVQLDVGQGQSLILRTRHHALLYDAGPRTGTFDLGARVVLPSLRKLGVRALDLMLLSHADADHAGGA
SAIAKGIPIKRVVGGETDGLPAFIGTQPCVSGERWTWDGVTFELWQWPGAISGNAKSCVLQVQANGERLLLTGDIDREAE
QAMLASPLAVPTEWLQAPHHGSRSSSSWAFVERLSPRNVLISRGRGNAFGHPHPQVLERYQRLGSQVYDSAEQGAVRVQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=637918 LUU92_RS17070 WP_257102383.1 3829497..3831722(-) (comA) [Pseudomonas extremorientalis strain 1502IPR-01]
ATGAAGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCCTGCGTTTTTTGCCGGCGTTGCCGCCTATGGGCTGGCT
GGTTGCCTGGCCGGTGCTGGCGTTGATGTTGTTGCCGTTTCGTACCTACCCACTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCATGCCTCAGCGCACAGTGGGCGCTGGATGATCGTCTGATGCCTGCCCTGGATGGCCAGACGCGCTGGCTGGAGGGC
CGGGTGATCGGGTTGCCGCGACAGACGGGCGAAGGTGTGCGCTTCGAACTGGCCGATAGCCGGTCGCGCAATGCCCGCTT
ACCCAAACGCATCCGCGTGTCCTGGCGTGGCGGGCCGCCGGTGCGCAGCGGTGAACGTTGGCGCCTGGCGGTTACCCTCA
AGCGTCCGACCGGGTTGCTGAATTTCCACGGGTTTGATCAGGAAGCCTGGCTGTTGGCCCAACGCATCGGCGCCACGGGC
TCGGTCAAGGATGGCGAGCGCCTGGCGCCAGCCCGCAATGCCTGGCGCGACAGCGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCCGGGAAGCAGGCCTGGTTGCCCTGGTACTGGGCGACGGCTCAGGGTTGGCCGCTGCCGACTGGCACGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCGGGTTTGATCTATGGGCTG
ATCGCCGGGTTGGCCCGCTACGGTTGCTGGCCGCGAACCTGGCCGTGGTTGCCCTGGGCGTGTGGCCTGGCGTTCAGCGC
TGCGTTGGGCTACGGCTGGCTCGCAGGGTTTGGCGTGCCGGTGCAACGGGCTTGTGTGATGGTCGGGTTGGTGTTGGTGT
GGCGGCTGCGCTTCCGGCATCTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTCAATGGGGTGCTGATGCTGGAGCCGTTG
GCCAGTTTGCAGCCTGGGTTCTGGTTGTCGTTTGCGGCGGTGGCGGTGTTGATTCTGGCGTTTGGTGGGCGGTTGGGGCC
GTGGAGCCTGTGGCAGGCATGGACCCGACCGCAGTGGCTGATTGCCATTGGGCTGTTTCCGGTGTTGTTGGTGTTGGGAC
TGCCCATCAGCCTGAGCGCACCGCTGGCCAACCTCGTGGCTGTGCCGTGGATCAGCCTGGTGGTGTTGCCGCTGGCGCTA
TCGGGGACCGCATTGCTGCCATTGCCATTTATTGGCGAAGGTCTTCTGTGGCTGGCGGGCGGCGCTCTGGATGGTTTGTT
CAGAGGGCTGGCGTGGCTCGCCGGACACATGCCGGCGTGGATCCCGGCGCAAGTACCATTGGTTTACTGGCTGGTGAGTC
TGCTGGGTGCCGTGTTGCTACTGCTGCCCAACGGCGTGCCGTTTCGCGTATTAGGCTGGTCAATGCTGTTGTTGGCAGTG
TTCCCTGCGCGAGAACTGGTGCCCCACGGGCAGATGGAGGTGGTGCAGTTGGACGTGGGGCAGGGGCAGTCGCTGATTCT
GCGCACGCGCCACCATGCATTGCTTTACGACGCCGGACCGCGCACCGGAACCTTTGATCTGGGCGCGCGGGTGGTGCTGC
CGTCGTTGCGAAAACTCGGGGTGAGGGCATTGGATCTGATGCTGCTCAGTCACGCCGATGCGGATCATGCCGGCGGCGCG
TCGGCGATTGCCAAGGGCATACCGATCAAGCGCGTGGTGGGCGGGGAAACCGATGGGCTGCCGGCATTTATCGGTACGCA
ACCTTGCGTCAGCGGCGAGCGATGGACCTGGGACGGGGTAACGTTCGAACTCTGGCAGTGGCCTGGCGCCATCAGTGGTA
ACGCAAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGACATCGACCGCGAAGCCGAA
CAGGCCATGCTCGCGTCGCCTCTGGCGGTGCCCACCGAGTGGCTGCAGGCGCCCCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTTGTCGAGCGGCTCTCCCCCCGTAATGTGCTGATCTCGCGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGCTGGAACGTTACCAGCGGCTGGGCAGCCAAGTGTATGACAGCGCCGAACAGGGCGCCGTGCGTGTGCAACTG
GGAGCATTCGCGCCACCGGTCGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGCTTACCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.166

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.759

100

0.385