Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LUU92_RS17065 Genome accession   NZ_CP089519
Coordinates   3828778..3829413 (-) Length   211 a.a.
NCBI ID   WP_058425437.1    Uniprot ID   A0A1H0L153
Organism   Pseudomonas extremorientalis strain 1502IPR-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3823778..3834413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUU92_RS17030 (LUU92_17000) - 3824158..3824829 (+) 672 WP_071491861.1 Bax inhibitor-1/YccA family protein -
  LUU92_RS17035 (LUU92_17005) murB 3824892..3825911 (-) 1020 WP_257102380.1 UDP-N-acetylmuramate dehydrogenase -
  LUU92_RS17040 (LUU92_17010) - 3825908..3826372 (-) 465 WP_257102381.1 low molecular weight protein-tyrosine-phosphatase -
  LUU92_RS17045 (LUU92_17015) kdsB 3826372..3827136 (-) 765 WP_257102382.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LUU92_RS17050 (LUU92_17020) - 3827133..3827318 (-) 186 WP_003174668.1 Trm112 family protein -
  LUU92_RS17055 (LUU92_17025) lpxK 3827343..3828353 (-) 1011 WP_071491865.1 tetraacyldisaccharide 4'-kinase -
  LUU92_RS17060 (LUU92_17030) - 3828353..3828781 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  LUU92_RS17065 (LUU92_17035) exbB 3828778..3829413 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LUU92_RS17070 (LUU92_17040) comA 3829497..3831722 (-) 2226 WP_257102383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUU92_RS17075 (LUU92_17045) - 3831858..3832373 (+) 516 WP_071491867.1 DUF2062 domain-containing protein -
  LUU92_RS17080 (LUU92_17050) - 3832370..3833740 (-) 1371 WP_257102384.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.03 Da        Isoelectric Point: 7.3615

>NTDB_id=637917 LUU92_RS17065 WP_058425437.1 3828778..3829413(-) (exbB) [Pseudomonas extremorientalis strain 1502IPR-01]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=637917 LUU92_RS17065 WP_058425437.1 3828778..3829413(-) (exbB) [Pseudomonas extremorientalis strain 1502IPR-01]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCTTGTGGACCCTGCGCGCCAGCCGTGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAGCTGCGCGCCAACTCCCCGTTGGGTGAGATCCTTGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTCGGCACGGTGTTGGGCATGATCGACATTTTCA
GTTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACTACGGCG
GCCGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0L153

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848