Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   N8I87_RS21615 Genome accession   NZ_CP106798
Coordinates   4670899..4671573 (+) Length   224 a.a.
NCBI ID   WP_263210890.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4665899..4676573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS21595 (N8I87_21595) - 4666015..4667244 (+) 1230 WP_263210884.1 acyltransferase family protein -
  N8I87_RS21600 (N8I87_21600) - 4667255..4668730 (+) 1476 WP_263210885.1 sensor histidine kinase -
  N8I87_RS21605 (N8I87_21605) vraR 4668727..4669410 (+) 684 WP_263210887.1 response regulator Regulator
  N8I87_RS21610 (N8I87_21610) - 4669511..4670902 (+) 1392 WP_263210889.1 sensor histidine kinase -
  N8I87_RS21615 (N8I87_21615) vraR 4670899..4671573 (+) 675 WP_263210890.1 response regulator Regulator
  N8I87_RS21620 (N8I87_21620) - 4671618..4672838 (+) 1221 WP_263210891.1 cytochrome P450 -
  N8I87_RS21625 (N8I87_21625) - 4672839..4674440 (-) 1602 WP_263210893.1 ABC transporter permease -
  N8I87_RS21630 (N8I87_21630) - 4674437..4675330 (-) 894 WP_263210894.1 ABC transporter ATP-binding protein -
  N8I87_RS21635 (N8I87_21635) - 4675404..4675901 (+) 498 WP_263210895.1 GbsR/MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24335.05 Da        Isoelectric Point: 4.6740

>NTDB_id=637488 N8I87_RS21615 WP_263210890.1 4670899..4671573(+) (vraR) [Streptomyces sp. HUAS 15-9]
MTTRTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVERVRELAPDVVLMDIRMPELNGIEATREIVAADGTA
KVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLITEFSRLFEAPRPAPTGQSAYGD
LTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=637488 N8I87_RS21615 WP_263210890.1 4670899..4671573(+) (vraR) [Streptomyces sp. HUAS 15-9]
ATGACGACTCGCACGATCCGCGTACTGATTGCGGACGACCAGATGATGGTGCGTGAGGGCTTCTCGGTCCTGCTGAACGC
GATGCCGGACATCGAGGTCGTCGGCGAGGCCGTCAACGGTCGTGAGGCCGTCGAGCGGGTGCGGGAACTCGCCCCGGACG
TCGTACTGATGGACATCCGGATGCCCGAGCTGAACGGCATCGAGGCGACGCGGGAGATTGTCGCCGCGGACGGTACGGCG
AAGGTGTTGGTGCTGACCACGTTCGACCTCGACGAGTATGTGTACCAGGCGCTGCGGGCGGGGGCCTCCGGCTTCCTGCT
GAAGGACGCCTCGGCGCGCCAGCTCGCCGACGGGGTGCGAGTGGTGGCCTCGGGTGAAGCGCTGCTGGCCCCCACGGTCA
CCAAGCGACTGATCACGGAGTTCTCGCGGCTGTTCGAGGCACCGCGGCCGGCCCCCACCGGACAGTCGGCGTACGGGGAC
CTGACCGAGCGGGAGACGGAGGTGCTGGTCCTGATAGCCCAGGGCCTGTCCAACGCGGAGATAGCCGAGCGGCTGGTGGT
CGCCGAGTCCACGATCAAGACCCATGTCAGTCGCATCCTGGTGAAGCTGGGCCTGCGTGACCGCACCCAGGCGGCGGTGT
TCGCCTATGAGGCGCGACTGGTCACGCCGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

96.875

0.424
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

96.875

0.415