Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LLE28_RS09185 Genome accession   NZ_CP106771
Coordinates   1757131..1757715 (+) Length   194 a.a.
NCBI ID   WP_003689924.1    Uniprot ID   Q5F636
Organism   Neisseria gonorrhoeae strain 10531     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752131..1762715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS09150 - 1752880..1752990 (+) 111 Protein_1772 IS5/IS1182 family transposase -
  LLE28_RS09155 - 1753071..1753859 (-) 789 WP_003697625.1 class I SAM-dependent methyltransferase -
  LLE28_RS09160 bioH 1753856..1754605 (-) 750 WP_010359261.1 pimeloyl-ACP methyl ester esterase BioH -
  LLE28_RS09165 - 1754604..1755319 (+) 716 Protein_1775 ComF family protein -
  LLE28_RS09170 trmL 1755384..1755848 (+) 465 WP_003689916.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  LLE28_RS09175 - 1755976..1756662 (+) 687 WP_003689919.1 septal ring lytic transglycosylase RlpA family protein -
  LLE28_RS09180 - 1756723..1757049 (+) 327 WP_003689921.1 PepSY domain-containing protein -
  LLE28_RS09185 ruvA 1757131..1757715 (+) 585 WP_003689924.1 Holliday junction branch migration protein RuvA Machinery gene
  LLE28_RS09190 - 1757715..1757852 (+) 138 WP_003689926.1 hypothetical protein -
  LLE28_RS09195 - 1757879..1759735 (+) 1857 WP_003700518.1 ABC transporter ATP-binding protein -
  LLE28_RS09200 rsgA 1759740..1760663 (+) 924 WP_003689928.1 ribosome small subunit-dependent GTPase A -
  LLE28_RS09205 - 1760776..1761000 (+) 225 WP_003689929.1 exodeoxyribonuclease VII small subunit -
  LLE28_RS09210 - 1760984..1761880 (+) 897 WP_003691917.1 polyprenyl synthetase family protein -
  LLE28_RS09215 - 1761997..1762296 (-) 300 WP_010359269.1 DUF2818 family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20729.99 Da        Isoelectric Point: 6.4967

>NTDB_id=636733 LLE28_RS09185 WP_003689924.1 1757131..1757715(+) (ruvA) [Neisseria gonorrhoeae strain 10531]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAASPAADETEDIVSTLLA
LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=636733 LLE28_RS09185 WP_003689924.1 1757131..1757715(+) (ruvA) [Neisseria gonorrhoeae strain 10531]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA
AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT
CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(150-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38

100

0.392
  ruvA Streptococcus pneumoniae D39

38

100

0.392
  ruvA Streptococcus pneumoniae TIGR4

37.5

100

0.387
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.951

100

0.371