Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LT469_RS14005 Genome accession   NZ_CP089336
Coordinates   1819693..1819791 (-) Length   32 a.a.
NCBI ID   WP_114549920.1    Uniprot ID   -
Organism   Eggerthella lenta strain APC055-928-H3-3     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814693..1824791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT469_RS07715 - 1815372..1816334 (-) 963 WP_021409058.1 glycine--tRNA ligase subunit alpha -
  LT469_RS07720 lepB 1816381..1816947 (-) 567 WP_021409057.1 signal peptidase I -
  LT469_RS07725 lepB 1817105..1817671 (-) 567 WP_021409056.1 signal peptidase I -
  LT469_RS07730 trmD 1817668..1818390 (-) 723 WP_021409060.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LT469_RS07735 - 1818433..1818909 (-) 477 WP_226843968.1 ribosome maturation factor RimM -
  LT469_RS07740 - 1818955..1819209 (-) 255 WP_021410421.1 KH domain-containing protein -
  LT469_RS07745 rpsP 1819215..1819460 (-) 246 WP_009304490.1 30S ribosomal protein S16 -
  LT469_RS14005 scnR 1819693..1819791 (-) 99 WP_114549920.1 winged helix-turn-helix domain-containing protein Regulator
  LT469_RS14010 - 1819847..1820644 (-) 798 WP_181815917.1 helix-turn-helix domain-containing protein -
  LT469_RS07755 - 1820631..1821260 (+) 630 WP_181815916.1 hypothetical protein -
  LT469_RS07760 - 1821604..1824081 (+) 2478 WP_021410419.1 molybdopterin-dependent oxidoreductase -
  LT469_RS07765 - 1824092..1824718 (+) 627 WP_114549917.1 DMSO/selenate family reductase complex B subunit -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3856.48 Da        Isoelectric Point: 10.4212

>NTDB_id=636639 LT469_RS14005 WP_114549920.1 1819693..1819791(-) (scnR) [Eggerthella lenta strain APC055-928-H3-3]
MHIRRIREKIEENPSNPVYLQTVWRFGCRLGG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=636639 LT469_RS14005 WP_114549920.1 1819693..1819791(-) (scnR) [Eggerthella lenta strain APC055-928-H3-3]
GTGCATATCAGAAGAATTCGCGAGAAGATAGAGGAGAACCCGTCGAACCCGGTGTACCTGCAAACCGTGTGGCGTTTCGG
CTGCCGCCTGGGAGGCTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

58.621

90.625

0.531
  vicR Streptococcus mutans UA159

60

62.5

0.375
  micA Streptococcus pneumoniae Cp1015

60

62.5

0.375