Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LUA64_RS06600 Genome accession   NZ_CP089331
Coordinates   1576902..1577000 (+) Length   32 a.a.
NCBI ID   WP_114549920.1    Uniprot ID   -
Organism   Eggerthella lenta strain APC055-529-1D     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571902..1582000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA64_RS06585 - 1571988..1572614 (-) 627 WP_114549917.1 DMSO/selenate family reductase complex B subunit -
  LUA64_RS06590 - 1572625..1575102 (-) 2478 WP_021410419.1 molybdopterin-dependent oxidoreductase -
  LUA64_RS15230 - 1575368..1576846 (+) 1479 WP_273693797.1 helix-turn-helix domain-containing protein -
  LUA64_RS06600 scnR 1576902..1577000 (+) 99 WP_114549920.1 winged helix-turn-helix domain-containing protein Regulator
  LUA64_RS06605 rpsP 1577233..1577478 (+) 246 WP_009304490.1 30S ribosomal protein S16 -
  LUA64_RS06610 - 1577484..1577738 (+) 255 WP_021410421.1 KH domain-containing protein -
  LUA64_RS06615 - 1577784..1578260 (+) 477 WP_226843968.1 ribosome maturation factor RimM -
  LUA64_RS06620 trmD 1578303..1579025 (+) 723 WP_021409060.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LUA64_RS06625 lepB 1579022..1579588 (+) 567 WP_021409056.1 signal peptidase I -
  LUA64_RS06630 lepB 1579746..1580312 (+) 567 WP_021409057.1 signal peptidase I -
  LUA64_RS06635 - 1580359..1581321 (+) 963 WP_021409058.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3856.48 Da        Isoelectric Point: 10.4212

>NTDB_id=636605 LUA64_RS06600 WP_114549920.1 1576902..1577000(+) (scnR) [Eggerthella lenta strain APC055-529-1D]
MHIRRIREKIEENPSNPVYLQTVWRFGCRLGG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=636605 LUA64_RS06600 WP_114549920.1 1576902..1577000(+) (scnR) [Eggerthella lenta strain APC055-529-1D]
GTGCATATCAGAAGAATTCGCGAGAAGATAGAGGAGAACCCGTCGAACCCGGTGTACCTGCAAACCGTGTGGCGTTTCGG
CTGCCGCCTGGGAGGCTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

58.621

90.625

0.531
  vicR Streptococcus mutans UA159

60

62.5

0.375
  micA Streptococcus pneumoniae Cp1015

60

62.5

0.375