Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LUX28_RS19450 Genome accession   NZ_CP089310
Coordinates   3893220..3893339 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4P130     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3888220..3898339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS19430 (LUX28_19430) narK 3888379..3889569 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  LUX28_RS19435 (LUX28_19435) argS 3889704..3891374 (-) 1671 WP_053573959.1 arginine--tRNA ligase -
  LUX28_RS19440 (LUX28_19440) - 3891371..3891799 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  LUX28_RS19445 (LUX28_19445) rapF 3892091..3893236 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  LUX28_RS19450 (LUX28_19450) phrF 3893220..3893339 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LUX28_RS19455 (LUX28_19455) - 3893537..3893740 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LUX28_RS19460 (LUX28_19460) - 3893754..3893957 (+) 204 WP_007407641.1 hypothetical protein -
  LUX28_RS19465 (LUX28_19465) - 3893992..3894177 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LUX28_RS19470 (LUX28_19470) - 3894365..3894646 (+) 282 WP_007407643.1 hypothetical protein -
  LUX28_RS19475 (LUX28_19475) - 3894690..3895202 (+) 513 WP_053573958.1 stage II sporulation protein M -
  LUX28_RS19480 (LUX28_19480) - 3895793..3896011 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LUX28_RS19485 (LUX28_19485) speB 3896179..3897051 (-) 873 WP_007407646.1 agmatinase -
  LUX28_RS19490 (LUX28_19490) speE 3897110..3897940 (-) 831 WP_053573957.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=636435 LUX28_RS19450 WP_015240778.1 3893220..3893339(+) (phrF) [Bacillus velezensis strain A4P130]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=636435 LUX28_RS19450 WP_015240778.1 3893220..3893339(+) (phrF) [Bacillus velezensis strain A4P130]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462