Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LUX28_RS19445 Genome accession   NZ_CP089310
Coordinates   3892091..3893236 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4P130     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3887091..3898236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS19425 (LUX28_19425) - 3887565..3888281 (-) 717 WP_053573960.1 Crp/Fnr family transcriptional regulator -
  LUX28_RS19430 (LUX28_19430) narK 3888379..3889569 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  LUX28_RS19435 (LUX28_19435) argS 3889704..3891374 (-) 1671 WP_053573959.1 arginine--tRNA ligase -
  LUX28_RS19440 (LUX28_19440) - 3891371..3891799 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  LUX28_RS19445 (LUX28_19445) rapF 3892091..3893236 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  LUX28_RS19450 (LUX28_19450) phrF 3893220..3893339 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LUX28_RS19455 (LUX28_19455) - 3893537..3893740 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LUX28_RS19460 (LUX28_19460) - 3893754..3893957 (+) 204 WP_007407641.1 hypothetical protein -
  LUX28_RS19465 (LUX28_19465) - 3893992..3894177 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LUX28_RS19470 (LUX28_19470) - 3894365..3894646 (+) 282 WP_007407643.1 hypothetical protein -
  LUX28_RS19475 (LUX28_19475) - 3894690..3895202 (+) 513 WP_053573958.1 stage II sporulation protein M -
  LUX28_RS19480 (LUX28_19480) - 3895793..3896011 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LUX28_RS19485 (LUX28_19485) speB 3896179..3897051 (-) 873 WP_007407646.1 agmatinase -
  LUX28_RS19490 (LUX28_19490) speE 3897110..3897940 (-) 831 WP_053573957.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=636434 LUX28_RS19445 WP_007407638.1 3892091..3893236(+) (rapF) [Bacillus velezensis strain A4P130]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=636434 LUX28_RS19445 WP_007407638.1 3892091..3893236(+) (rapF) [Bacillus velezensis strain A4P130]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564