Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LUX28_RS16480 Genome accession   NZ_CP089310
Coordinates   3276657..3276797 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain A4P130     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271657..3281797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS16455 (LUX28_16455) - 3271954..3272337 (-) 384 WP_053574130.1 hotdog fold thioesterase -
  LUX28_RS16460 (LUX28_16460) comA 3272359..3273003 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LUX28_RS16465 (LUX28_16465) comP 3273084..3275387 (-) 2304 WP_040238945.1 histidine kinase Regulator
  LUX28_RS16475 (LUX28_16475) comQ 3275540..3276526 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LUX28_RS16480 (LUX28_16480) degQ 3276657..3276797 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LUX28_RS16485 (LUX28_16485) - 3277260..3277601 (+) 342 WP_007408677.1 hypothetical protein -
  LUX28_RS16490 (LUX28_16490) - 3277608..3278831 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  LUX28_RS16495 (LUX28_16495) - 3278961..3280427 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  LUX28_RS16500 (LUX28_16500) - 3280445..3280996 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  LUX28_RS16505 (LUX28_16505) - 3281093..3281491 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=636424 LUX28_RS16480 WP_003152043.1 3276657..3276797(-) (degQ) [Bacillus velezensis strain A4P130]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=636424 LUX28_RS16480 WP_003152043.1 3276657..3276797(-) (degQ) [Bacillus velezensis strain A4P130]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891