Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LUX28_RS16460 Genome accession   NZ_CP089310
Coordinates   3272359..3273003 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain A4P130     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3267359..3278003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS16425 (LUX28_16425) - 3268544..3268975 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  LUX28_RS16430 (LUX28_16430) - 3268975..3269316 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LUX28_RS16435 (LUX28_16435) - 3269309..3270790 (+) 1482 WP_053574131.1 Na+/H+ antiporter subunit D -
  LUX28_RS16440 (LUX28_16440) - 3270796..3271272 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  LUX28_RS16445 (LUX28_16445) - 3271272..3271556 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  LUX28_RS16450 (LUX28_16450) mnhG 3271540..3271914 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LUX28_RS16455 (LUX28_16455) - 3271954..3272337 (-) 384 WP_053574130.1 hotdog fold thioesterase -
  LUX28_RS16460 (LUX28_16460) comA 3272359..3273003 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LUX28_RS16465 (LUX28_16465) comP 3273084..3275387 (-) 2304 WP_040238945.1 histidine kinase Regulator
  LUX28_RS16475 (LUX28_16475) comQ 3275540..3276526 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LUX28_RS16480 (LUX28_16480) degQ 3276657..3276797 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LUX28_RS16485 (LUX28_16485) - 3277260..3277601 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=636421 LUX28_RS16460 WP_003152052.1 3272359..3273003(-) (comA) [Bacillus velezensis strain A4P130]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=636421 LUX28_RS16460 WP_003152052.1 3272359..3273003(-) (comA) [Bacillus velezensis strain A4P130]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864