Detailed information NTG0636345

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LT988_RS08470
• Genome accession: NZ_CP089309
• Coordinates: 1856028..1857380 (+)
• Length: 450 a.a.
• NCBI ID: WP_232409732.1
• Uniprot ID: -
• Organism: Thiocapsa bogorovii strain BBS
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1851028..1862380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT988_RS08455 (LT988_08455)	sucD	1851974..1852846 (-)	873	WP_232409729.1	succinate--CoA ligase subunit alpha	-
LT988_RS08460 (LT988_08460)	sucC	1852848..1854035 (-)	1188	WP_232409730.1	ADP-forming succinate--CoA ligase subunit beta	-
LT988_RS08465 (LT988_08465)	-	1854195..1855841 (+)	1647	WP_232409731.1	PAS domain-containing sensor histidine kinase	-
LT988_RS08470 (LT988_08470)	pilR	1856028..1857380 (+)	1353	WP_232409732.1	sigma-54 dependent transcriptional regulator	Regulator
LT988_RS08475 (LT988_08475)	argA	1857409..1858782 (+)	1374	WP_232409733.1	amino-acid N-acetyltransferase	-

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 48974.27 Da
• Isoelectric Point: 5.8568

>NTDB_id=636345 LT988_RS08470 WP_232409732.1 1856028..1857380(+) (pilR) [Thiocapsa bogorovii strain BBS]
MTKAQALVVDDESDILDLLKITLGRMDIRALTAMTVIDAKHQLERNRFDLCLTDMSLPDGNGIDLIRHISEHYPDLPVAM
ITAHGNMESAVAAMKAGAFDFVPKPVDLQLLRQLVGSALRLRETAATGGESRGAGGANLIGDSRAMEQIRQMIGKLARNQ
APVFITGESGTGKELAARLIHGQGPRAAGPFVAVNCGAIPQDLVESELFGHKKGSFTGAVSDKEGLFQAASGGTLFLDEV
ADLPLPAQVKLLRAVQEKSVRPVGAQQEVAVDARIISASHRDLNLEVDKGHFRQDLFYRINVIELRMPALRERPRDIPAL
AERMLLRIARHHKGQPAMTLSEDAVDALMDYGFPGNVRELENILERATALCEGSVIEVGDLYLPQADGPAPPARAQIDDS
VPLEDYLGEIEKKAILDALDETRWNRTAAAKKLGMTLRSLRYRLAKLGIE

Nucleotide

• Length: 1353 bp

>NTDB_id=636345 LT988_RS08470 WP_232409732.1 1856028..1857380(+) (pilR) [Thiocapsa bogorovii strain BBS]
ATGACGAAGGCTCAAGCGCTGGTCGTCGACGACGAGTCCGATATCCTCGACCTCTTGAAGATCACGCTCGGGCGAATGGA
CATTCGGGCATTGACCGCCATGACGGTCATCGACGCCAAGCACCAGCTCGAACGCAACCGCTTCGACCTCTGCCTGACCG
ACATGAGCCTCCCGGACGGAAACGGCATCGATCTGATCCGCCATATCTCCGAGCACTATCCCGACCTCCCGGTCGCGATG
ATCACCGCCCACGGCAACATGGAATCGGCGGTCGCCGCCATGAAGGCCGGGGCCTTCGACTTTGTCCCCAAACCGGTGGA
TCTGCAGCTGCTGCGCCAGCTCGTCGGCTCGGCGCTGCGGCTGCGCGAGACCGCGGCGACCGGCGGGGAAAGCCGCGGCG
CCGGCGGGGCAAACCTGATCGGAGACTCGCGCGCGATGGAGCAGATCCGCCAGATGATCGGCAAGCTCGCGCGTAACCAG
GCCCCGGTCTTCATCACCGGCGAGAGCGGCACGGGCAAGGAGCTCGCGGCTCGACTCATTCACGGCCAAGGCCCGCGTGC
CGCCGGGCCCTTCGTCGCCGTGAACTGCGGGGCCATTCCGCAGGACTTGGTCGAAAGCGAGCTCTTCGGTCACAAGAAGG
GCAGCTTCACCGGCGCCGTGAGCGACAAGGAGGGGCTGTTTCAAGCCGCCTCGGGCGGCACCTTGTTTCTCGACGAGGTC
GCGGATCTGCCGCTCCCGGCGCAGGTGAAACTCTTACGGGCCGTGCAGGAGAAGAGCGTGCGTCCGGTCGGCGCTCAACA
GGAGGTCGCCGTCGACGCACGGATCATCAGCGCCAGTCATCGCGATCTCAACCTGGAGGTCGACAAGGGACACTTCAGGC
AAGATCTGTTTTATCGCATCAACGTCATCGAGCTGCGCATGCCCGCGCTGCGCGAGCGCCCCCGCGACATCCCCGCTCTG
GCGGAACGGATGCTGTTGCGAATCGCTCGGCATCATAAGGGCCAGCCCGCCATGACCCTGTCGGAGGACGCCGTCGACGC
CTTGATGGACTACGGCTTTCCGGGCAACGTGCGCGAGCTCGAAAACATCCTGGAGCGCGCGACCGCACTCTGCGAAGGAT
CGGTCATCGAGGTCGGGGATCTCTATCTGCCGCAGGCCGACGGCCCGGCGCCACCCGCCCGCGCACAGATCGACGACAGT
GTTCCGCTGGAGGATTATCTCGGCGAGATCGAGAAGAAGGCGATCCTCGACGCCCTCGACGAGACGCGTTGGAACCGCAC
CGCCGCGGCAAAGAAACTGGGGATGACCCTGAGATCACTGCGTTATCGTCTCGCCAAGCTCGGCATCGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Bacterial regulatory protein, Fis family (HTH_8) (407-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.111	100	0.611
pilR	Acinetobacter baumannii strain A118	51.087	100	0.522
luxO	Vibrio cholerae strain A1552	37.783	98.222	0.371