Detailed information NTG0636275

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LS633_RS05595
• Genome accession: NZ_CP089304
• Coordinates: 1176113..1177459 (+)
• Length: 448 a.a.
• NCBI ID: WP_210705166.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NIBR-H-19
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1171113..1182459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LS633_RS05570 (LS633_05570)	pgeF	1171328..1172050 (-)	723	WP_210705172.1	peptidoglycan editing factor PgeF	-
LS633_RS05575 (LS633_05575)	rluD	1172047..1173009 (-)	963	WP_042561128.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LS633_RS05580 (LS633_05580)	-	1173161..1174177 (+)	1017	WP_042561129.1	outer membrane protein assembly factor BamD	-
LS633_RS05585 (LS633_05585)	-	1174304..1174537 (+)	234	WP_232392535.1	PP0621 family protein	-
LS633_RS05590 (LS633_05590)	pilS	1174527..1176116 (+)	1590	WP_232392536.1	ATP-binding protein	Regulator
LS633_RS05595 (LS633_05595)	pilR	1176113..1177459 (+)	1347	WP_210705166.1	sigma-54 dependent transcriptional regulator	Regulator
LS633_RS05600 (LS633_05600)	thiO	1177589..1178689 (-)	1101	WP_210705164.1	glycine oxidase ThiO	-
LS633_RS05605 (LS633_05605)	-	1178747..1179148 (-)	402	WP_047303296.1	type IV pilin protein	-
LS633_RS05610 (LS633_05610)	-	1179164..1182253 (-)	3090	WP_210705163.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50082.39 Da
• Isoelectric Point: 6.3269

>NTDB_id=636275 LS633_RS05595 WP_210705166.1 1176113..1177459(+) (pilR) [Pseudomonas sp. NIBR-H-19]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLNSYSARNLGEAQALLQRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGDASTSIDRRLLGDSPPMRNLRKQVDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLQRLAKDTGQPAACLHLHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=636275 LS633_RS05595 WP_210705166.1 1176113..1177459(+) (pilR) [Pseudomonas sp. NIBR-H-19]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCAACAGCTACAGCGCACGCAATCTGGGCGAGGCCCAGGCGCTGTTGCAGCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGGCTGGAACTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATTACCGCGTACGGCAGCCTGGAAACGGCAATCAATGCGTTGAAGGCGGGAGCTTTCGACTTTCTGACCAA
ACCGGTAGATCTCACCCGCCTGCGGGAATTGGTCTCCACAGCACTGCGCATGCCCGCCGCTGGCGACGCAAGCACCTCAA
TTGATCGACGCTTGCTGGGTGATTCGCCGCCGATGCGCAACCTGCGCAAACAAGTCGACAAACTCGCTCGCAGCCAGGCC
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAGCTGGTCGCACGACTGATCCACGAACAAGGGCCTCGCGCCGG
CAAGCCGTTCGTGCCGGTGAACTGCGGGGCAATACCTTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTTACCGGCGCGGTCGAGGACAAACCGGGCCTGTTCCAGGCAGCACAGGGCGGGACATTGTTTCTCGATGAAGTGGCG
GACTTGCCACTGTCGATGCAGGTAAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGTGTGGGCGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCGACGCACAAGGACCTCGACGCAGAAGTCGCCGCCGAACGCTTTCGTCAGG
ATCTTTATTACCGGCTAAACGTGATCGAATTGCGTGTGCCGCCCCTGCGCGAGCGACGGGATGACATTGAGGTGTTGGCG
GCGCACATGCTTCAGCGTCTGGCCAAAGACACCGGCCAACCAGCGGCATGCCTGCATCTGCACGCTTTGGAGGCTCTGAA
AAACTATCGGTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCATACCTTGTGCGAGAACCGTACGA
TCGAGGCTGAAGATTTGCGCTTGAGCGAGGGCAACTGTGCGGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAAT
CTGGAGGATTATCTGGAGAACGTCGAACGTAAACTGATTTTGCAGGCGCTGGAGGAGACCCGCTGGAATCGGACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGGTCGATGCGTTACAGACTGAAAAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	98.884	0.781
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502