Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LS633_RS05590 Genome accession   NZ_CP089304
Coordinates   1174527..1176116 (+) Length   529 a.a.
NCBI ID   WP_232392536.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBR-H-19     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169527..1181116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS633_RS05570 (LS633_05570) pgeF 1171328..1172050 (-) 723 WP_210705172.1 peptidoglycan editing factor PgeF -
  LS633_RS05575 (LS633_05575) rluD 1172047..1173009 (-) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LS633_RS05580 (LS633_05580) - 1173161..1174177 (+) 1017 WP_042561129.1 outer membrane protein assembly factor BamD -
  LS633_RS05585 (LS633_05585) - 1174304..1174537 (+) 234 WP_232392535.1 PP0621 family protein -
  LS633_RS05590 (LS633_05590) pilS 1174527..1176116 (+) 1590 WP_232392536.1 ATP-binding protein Regulator
  LS633_RS05595 (LS633_05595) pilR 1176113..1177459 (+) 1347 WP_210705166.1 sigma-54 dependent transcriptional regulator Regulator
  LS633_RS05600 (LS633_05600) thiO 1177589..1178689 (-) 1101 WP_210705164.1 glycine oxidase ThiO -
  LS633_RS05605 (LS633_05605) - 1178747..1179148 (-) 402 WP_047303296.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58591.40 Da        Isoelectric Point: 7.0065

>NTDB_id=636274 LS633_RS05590 WP_232392536.1 1174527..1176116(+) (pilS) [Pseudomonas sp. NIBR-H-19]
MIAEASHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRNGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLMLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQTASKVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQTLLAQSHLQGHLID
DYSTALVERLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVTESRMQATER
QKIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSAMLHDQAEVWLALFIDPESQLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=636274 LS633_RS05590 WP_232392536.1 1174527..1176116(+) (pilS) [Pseudomonas sp. NIBR-H-19]
GTGATCGCTGAGGCCTCCCACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGTTTAAGTGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACATGGACAATCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCA
ACGGCAGCTGGCTGTATCTGGTGCTGAACATTTTGCTGGTGGTGTTCCTGGAGAACACCCGACGCCCCGCGCAATTGTTC
AGCCTGGCGCTGGTCGACGTTCTGATGCTGTGCGGCTTGTTCTACGCGGCTGGCGGCGTGGCCAGTGCGCTCGGCAACTT
GCTGATCGTTTCTGTGGCGATCAGCAATACCTTGCTGCGCCGCCGCATCGGTCTGCTGATCGCCGCCATCGGTGCCATCG
GCATTGTCGGTTTAAGCTTTCTGCTGAGTTTCAGCCACCCCCTGAGCGCCAACGAATACCTGCAGGCCGGCACCCTCGGC
GCGTTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGCTGGTCCGGAGGCTGGAGGTCAGCGAAACCCTGGCCGAGCAAAC
CGCCAGCAAAGTGGTCGGCCTGGAGGCTCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATCCTGGTGCTCGACG
AACAACGCCGGGTACAACTGGCCAATCACAGCGCGCAGACCCTGCTCGCGCAATCGCACCTTCAGGGCCATTTGATCGAC
GATTACTCGACCGCGCTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACACTGCGCCCACAAAGTCTGAAAATCCC
CGGCAACGGTCTGGAACTGCAACCAAGCTTCATCGCCCTCGAACAAAGCCCCAATCAACAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAGATCGCTCAACAAGCCCAGCAACTGAAACTTGCCGCGCTCGGGCGTTTGACGGCCGGCATTTCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGTTGGGGGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTTATCGAAAACGTCCTGCAACTGTCCCGCCGTCAAC
AGAGCGCTCCACAACGGCTGGACCTCAAGCCGTGGCTGGAAAACTTCGTCACTGAGAGCCGCATGCAGGCTACCGAACGG
CAGAAGATTCATCTGCGGATCAACTCGGGCGACTTCGCCACCCTGATGGATCCCAACCAGCTCACACAAATTCTCGACAA
TCTTTTACGCAACGGCTGGCGTCACAGCGCCATGCTGCATGATCAGGCCGAGGTCTGGCTGGCCCTGTTCATCGACCCCG
AGAGCCAACTGGCGGTGCTCGAAGTTCAGGACAACGGCCCCGGCGTACCGCTTGATCAGCAAGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603