Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LS633_RS02185 Genome accession   NZ_CP089304
Coordinates   420304..422538 (-) Length   744 a.a.
NCBI ID   WP_210704376.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBR-H-19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415304..427538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS633_RS02150 (LS633_02150) murB 415683..416702 (-) 1020 WP_210704382.1 UDP-N-acetylmuramate dehydrogenase -
  LS633_RS02155 (LS633_02155) - 416699..417163 (-) 465 WP_210704380.1 low molecular weight protein-tyrosine-phosphatase -
  LS633_RS02160 (LS633_02160) kdsB 417163..417927 (-) 765 WP_210704379.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LS633_RS02165 (LS633_02165) - 417924..418109 (-) 186 WP_003174668.1 Trm112 family protein -
  LS633_RS02170 (LS633_02170) lpxK 418132..419142 (-) 1011 WP_232392439.1 tetraacyldisaccharide 4'-kinase -
  LS633_RS02175 (LS633_02175) - 419142..419570 (-) 429 WP_210704377.1 biopolymer transporter ExbD -
  LS633_RS02180 (LS633_02180) exbB 419567..420202 (-) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LS633_RS02185 (LS633_02185) comA 420304..422538 (-) 2235 WP_210704376.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LS633_RS02190 (LS633_02190) - 422675..423193 (+) 519 WP_210704375.1 DUF2062 domain-containing protein -
  LS633_RS02195 (LS633_02195) - 423347..424126 (-) 780 WP_042560454.1 ABC transporter permease -
  LS633_RS02200 (LS633_02200) - 424123..425055 (-) 933 WP_200616882.1 ABC transporter ATP-binding protein -
  LS633_RS02205 (LS633_02205) - 425192..425815 (-) 624 WP_210704374.1 glutathione S-transferase -
  LS633_RS02210 (LS633_02210) - 425859..426518 (-) 660 WP_210704373.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81826.07 Da        Isoelectric Point: 10.1736

>NTDB_id=636268 LS633_RS02185 WP_210704376.1 420304..422538(-) (comA) [Pseudomonas sp. NIBR-H-19]
MRTGMMALAVGLLAPIFMPALPPVWLMVLLAVVALMLLPFRSYPLAFLLFGFTWACVSAHWALQDRLPVALDGETRWLEG
RVVGLPQNSDGVVRFELADAHSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TVKEGQRLGEARWAWRDNIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIGWLFQGLALIAGQWPAWIAPSLPGWALAIGSLGAVLLLLPRGVPLRPLGWPLLLILV
VPPRERLDAGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFRDFDLGERVVLPALRKLNVETLDLMLLSHADADHAGGA
LAVARRLQVKQVISGDPPGLPAELNAQACESGRQWQWDGVSFQLWQWADAHDSNQRSCVLQIEANGERLMLTGDIDKHAE
RVLLQGPLNVATQWLQAPHHGSRSSSSMALLKALKPDAVLISRGQGNSFGHPHPTVIARYRQQGLRIYDSAEHGAIHLQL
GAFKPPWTMRQYPRFWREPPQSSH

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=636268 LS633_RS02185 WP_210704376.1 420304..422538(-) (comA) [Pseudomonas sp. NIBR-H-19]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTTTGCTTGCTCCGATATTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGGCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTCTGCTTTTTGGTTTCACCT
GGGCTTGCGTCAGCGCGCATTGGGCGTTGCAGGATCGCTTGCCGGTGGCGCTGGATGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGGTTGCCGCAAAACAGCGACGGCGTGGTTCGTTTCGAACTGGCGGACGCCCATTCGCGCCACGGCAAACT
GCCGTCACTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCGAGCGGGTTACTCAATCCGGACGCCTTTGATTACGAAGCCTGGCTACTCGCGCAACGCATTGGCGCAACGGGC
ACGGTCAAGGAGGGTCAGCGCCTTGGCGAGGCGCGATGGGCGTGGCGAGACAACATTCGTCAGCGCTTGCTGGCGGTCGA
CGCGCAGGGCCGGGGAGGGGCGTTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGCCTGAGTCGCGAGGATTGGCAGACTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCATGCTGGCGGCGGTGATGTATTTGCTG
GTCGCCGGGCTGGCCCGATATGGTCTGTGGCCGCTGCGTTGGCCGTGGCTGCCTTGGGCCTGTGGTCTGGCCTTCGCCGC
AGCACTCGGTTACGGCTTGCTCGCCGGATTTGATGTGCCGGTGCGACGGGCCTGCGTGATGGTCGGGCTGGTGCTGCTGT
GGCGCCTGCGCTTTCGTCATCTCGGCGCCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGTTGCTGGATCCGCTG
GCCAGTCTGCGCCCCGGCCTCTGGTTGTCATTTGCGGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGTCTTGGGGC
ATGGCGCTGGTGGCAGACATGGACGCGGGCGCAATGGTTGATCGCGATCGGTCTCTGCCCGGTGTTGTTGGCGCTGAATC
TGCCGATCAGCCTCAGTGGGCCGTTGGCGAATTTGCTGGCGGTGCCTTGGGTCAGTCTGGTGGTGCTGCCCCCGGCATTG
CTCGGGACCCTGTTGTTGCCAGTGCCGTATGTCGGCGAAGGGCTGTTGTGGCTGGCGGGTGGTTTGATCGGCTGGCTGTT
CCAGGGCCTGGCGCTGATCGCCGGGCAGTGGCCGGCGTGGATTGCGCCGTCGCTTCCCGGTTGGGCGTTGGCTATCGGCA
GTCTTGGTGCCGTGCTGTTGCTGTTGCCGCGAGGGGTACCGCTGCGTCCGCTGGGCTGGCCATTGTTGTTGATTCTGGTC
GTGCCACCTCGGGAGCGGCTGGACGCCGGACTGGCCGATGTCTGGCAACTCGATGTCGGCCAGGGCCTGGCGATTCTGAT
CCGTACTCGTCATCACGCGCTGCTCTACGATGCCGGGCCGCGGTTCCGCGATTTCGATCTTGGCGAACGTGTTGTCCTGC
CGGCCCTGCGCAAACTGAATGTCGAGACACTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
TTGGCCGTTGCGCGCCGTTTGCAGGTGAAGCAAGTCATCAGCGGCGATCCGCCGGGGCTGCCAGCCGAACTGAACGCGCA
GGCGTGTGAAAGTGGCCGGCAGTGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGGCGGACGCTCACGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGTGAGCGCCTGATGCTGACCGGCGATATTGATAAACACGCCGAG
CGAGTCTTGCTGCAAGGCCCTCTGAACGTAGCCACTCAATGGCTGCAAGCTCCGCACCACGGCAGCCGCAGTTCATCATC
GATGGCATTGCTCAAAGCGTTGAAACCTGACGCAGTCTTGATATCCCGGGGCCAGGGCAACTCGTTCGGTCATCCGCATC
CGACCGTCATTGCGCGTTATCGCCAGCAAGGGCTGCGTATTTACGACAGTGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCGCGTTCAAACCACCGTGGACAATGCGCCAGTACCCGCGTTTCTGGCGTGAACCGCCGCAGTCCTCCCATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.966

96.237

0.616
  comA Ralstonia pseudosolanacearum GMI1000

34.129

100

0.384