Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LS633_RS02180 Genome accession   NZ_CP089304
Coordinates   419567..420202 (-) Length   211 a.a.
NCBI ID   WP_042560451.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBR-H-19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414567..425202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS633_RS02145 (LS633_02145) - 414874..415344 (-) 471 WP_034155364.1 (2Fe-2S)-binding protein -
  LS633_RS02150 (LS633_02150) murB 415683..416702 (-) 1020 WP_210704382.1 UDP-N-acetylmuramate dehydrogenase -
  LS633_RS02155 (LS633_02155) - 416699..417163 (-) 465 WP_210704380.1 low molecular weight protein-tyrosine-phosphatase -
  LS633_RS02160 (LS633_02160) kdsB 417163..417927 (-) 765 WP_210704379.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LS633_RS02165 (LS633_02165) - 417924..418109 (-) 186 WP_003174668.1 Trm112 family protein -
  LS633_RS02170 (LS633_02170) lpxK 418132..419142 (-) 1011 WP_232392439.1 tetraacyldisaccharide 4'-kinase -
  LS633_RS02175 (LS633_02175) - 419142..419570 (-) 429 WP_210704377.1 biopolymer transporter ExbD -
  LS633_RS02180 (LS633_02180) exbB 419567..420202 (-) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LS633_RS02185 (LS633_02185) comA 420304..422538 (-) 2235 WP_210704376.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LS633_RS02190 (LS633_02190) - 422675..423193 (+) 519 WP_210704375.1 DUF2062 domain-containing protein -
  LS633_RS02195 (LS633_02195) - 423347..424126 (-) 780 WP_042560454.1 ABC transporter permease -
  LS633_RS02200 (LS633_02200) - 424123..425055 (-) 933 WP_200616882.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=636267 LS633_RS02180 WP_042560451.1 419567..420202(-) (exbB) [Pseudomonas sp. NIBR-H-19]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=636267 LS633_RS02180 WP_042560451.1 419567..420202(-) (exbB) [Pseudomonas sp. NIBR-H-19]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGTTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCCCGGGTCATTCACGAGCTCGAGCGCTACAT
CAATGCACTCGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACCGTGCTCGGCATGATCGACATTTTCA
GCGCGTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTTCTGGCCGGTGGTATCTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGACCTGGCTGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853