Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   YBT1518_RS20420 Genome accession   NC_022873
Coordinates   4105943..4107181 (-) Length   412 a.a.
NCBI ID   WP_016080551.1    Uniprot ID   A0A9X7EAD0
Organism   Bacillus thuringiensis YBT-1518     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4100943..4112181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS20395 (YBT1518_20735) spoVS 4101352..4101612 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  YBT1518_RS20400 (YBT1518_20740) - 4101762..4102556 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  YBT1518_RS20405 (YBT1518_20745) rny 4102719..4104284 (-) 1566 WP_023522826.1 ribonuclease Y -
  YBT1518_RS20415 (YBT1518_20750) recA 4104767..4105798 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  YBT1518_RS20420 (YBT1518_20755) cinA 4105943..4107181 (-) 1239 WP_016080551.1 competence/damage-inducible protein CinA Machinery gene
  YBT1518_RS20425 (YBT1518_20760) pgsA 4107202..4107780 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  YBT1518_RS20430 (YBT1518_20765) - 4107845..4108756 (-) 912 WP_000137473.1 helix-turn-helix domain-containing protein -
  YBT1518_RS20435 (YBT1518_20770) - 4108778..4109563 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  YBT1518_RS20440 (YBT1518_20775) - 4109702..4109950 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  YBT1518_RS20445 (YBT1518_20780) ymfI 4110026..4110739 (-) 714 WP_023522827.1 elongation factor P 5-aminopentanone reductase -
  YBT1518_RS20450 (YBT1518_20785) yfmH 4110840..4112126 (-) 1287 WP_023522828.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45408.72 Da        Isoelectric Point: 5.5024

>NTDB_id=63626 YBT1518_RS20420 WP_016080551.1 4105943..4107181(-) (cinA) [Bacillus thuringiensis YBT-1518]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=63626 YBT1518_RS20420 WP_016080551.1 4105943..4107181(-) (cinA) [Bacillus thuringiensis YBT-1518]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTATTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment