Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   YBT1518_RS20415 Genome accession   NC_022873
Coordinates   4104767..4105798 (-) Length   343 a.a.
NCBI ID   WP_001283854.1    Uniprot ID   -
Organism   Bacillus thuringiensis YBT-1518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4099767..4110798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS20390 (YBT1518_20730) - 4100369..4101292 (-) 924 WP_000688049.1 dipeptidase -
  YBT1518_RS20395 (YBT1518_20735) spoVS 4101352..4101612 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  YBT1518_RS20400 (YBT1518_20740) - 4101762..4102556 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  YBT1518_RS20405 (YBT1518_20745) rny 4102719..4104284 (-) 1566 WP_023522826.1 ribonuclease Y -
  YBT1518_RS20415 (YBT1518_20750) recA 4104767..4105798 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  YBT1518_RS20420 (YBT1518_20755) cinA 4105943..4107181 (-) 1239 WP_016080551.1 competence/damage-inducible protein CinA Machinery gene
  YBT1518_RS20425 (YBT1518_20760) pgsA 4107202..4107780 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  YBT1518_RS20430 (YBT1518_20765) - 4107845..4108756 (-) 912 WP_000137473.1 helix-turn-helix domain-containing protein -
  YBT1518_RS20435 (YBT1518_20770) - 4108778..4109563 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  YBT1518_RS20440 (YBT1518_20775) - 4109702..4109950 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  YBT1518_RS20445 (YBT1518_20780) ymfI 4110026..4110739 (-) 714 WP_023522827.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37342.28 Da        Isoelectric Point: 4.9057

>NTDB_id=63625 YBT1518_RS20415 WP_001283854.1 4104767..4105798(-) (recA) [Bacillus thuringiensis YBT-1518]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VRDHHGIGEDSGVEDTEDSTLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=63625 YBT1518_RS20415 WP_001283854.1 4104767..4105798(-) (recA) [Bacillus thuringiensis YBT-1518]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAACGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTAGATGTGGCGCTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACGACAGTTTCATTACATGCAATTGCAGAA
GTACAACGTCAAGGTGGACAAGCAGCATTCATCGATGCGGAGCACGCAATGGATCCTGTATATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGATTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGACATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCAGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAGCTTTCAGGAGCAATCAACAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTGAAAAATAAAGTAGCGCCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTGGATATGGCTTCTGAGCTTGATATCGTTCAAAAGAGCGGTGCTTGGTATTCTTATAATGAAG
AACGTTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGACTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGATCATCACGGAATTGGTGAAGATTCTGGTGTGGAAGACACGGAAGATTCAACTCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.486

97.085

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.335

0.726
  recA Streptococcus pneumoniae D39

68.222

100

0.682
  recA Streptococcus pneumoniae Rx1

68.222

100

0.682
  recA Streptococcus pneumoniae R6

68.222

100

0.682
  recA Streptococcus pneumoniae TIGR4

68.222

100

0.682
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.262

97.959

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

98.251

0.627
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.254

0.618
  recA Acinetobacter baumannii D1279779

60.234

99.708

0.601
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Glaesserella parasuis strain SC1401

63.438

93.294

0.592
  recA Vibrio cholerae strain A1552

64.952

90.671

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.952

90.671

0.589
  recA Acinetobacter baylyi ADP1

61.801

93.878

0.58
  recA Pseudomonas stutzeri DSM 10701

62.187

93.294

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

92.128

0.56

Multiple sequence alignment