Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LT232_RS15025 Genome accession   NZ_CP089287
Coordinates   3036308..3036427 (-) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain GSBZ09     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031308..3041427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS14985 (LT232_14985) speE 3031709..3032539 (+) 831 WP_003151052.1 spermidine synthase -
  LT232_RS14990 (LT232_14990) speB 3032598..3033470 (+) 873 WP_007614448.1 agmatinase -
  LT232_RS14995 (LT232_14995) - 3033638..3033856 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LT232_RS15000 (LT232_15000) - 3034447..3034959 (-) 513 WP_094031368.1 stage II sporulation protein M -
  LT232_RS15005 (LT232_15005) - 3035003..3035284 (-) 282 WP_007407643.1 hypothetical protein -
  LT232_RS15010 (LT232_15010) - 3035470..3035655 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LT232_RS15015 (LT232_15015) - 3035690..3035893 (-) 204 WP_007407641.1 hypothetical protein -
  LT232_RS15020 (LT232_15020) - 3035907..3036110 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LT232_RS15025 (LT232_15025) phrF 3036308..3036427 (-) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LT232_RS15030 (LT232_15030) rapF 3036411..3037556 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  LT232_RS15035 (LT232_15035) - 3037787..3039142 (+) 1356 WP_015240776.1 YncE family protein -
  LT232_RS15040 (LT232_15040) - 3039182..3040558 (+) 1377 WP_094031367.1 YncE family protein -
  LT232_RS15045 (LT232_15045) - 3040565..3041077 (-) 513 Protein_2931 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=636178 LT232_RS15025 WP_007407639.1 3036308..3036427(-) (phrF) [Bacillus velezensis strain GSBZ09]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=636178 LT232_RS15025 WP_007407639.1 3036308..3036427(-) (phrF) [Bacillus velezensis strain GSBZ09]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462