Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LT232_RS15030 Genome accession   NZ_CP089287
Coordinates   3036411..3037556 (-) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031411..3042556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS14985 (LT232_14985) speE 3031709..3032539 (+) 831 WP_003151052.1 spermidine synthase -
  LT232_RS14990 (LT232_14990) speB 3032598..3033470 (+) 873 WP_007614448.1 agmatinase -
  LT232_RS14995 (LT232_14995) - 3033638..3033856 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LT232_RS15000 (LT232_15000) - 3034447..3034959 (-) 513 WP_094031368.1 stage II sporulation protein M -
  LT232_RS15005 (LT232_15005) - 3035003..3035284 (-) 282 WP_007407643.1 hypothetical protein -
  LT232_RS15010 (LT232_15010) - 3035470..3035655 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LT232_RS15015 (LT232_15015) - 3035690..3035893 (-) 204 WP_007407641.1 hypothetical protein -
  LT232_RS15020 (LT232_15020) - 3035907..3036110 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LT232_RS15025 (LT232_15025) phrF 3036308..3036427 (-) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LT232_RS15030 (LT232_15030) rapF 3036411..3037556 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  LT232_RS15035 (LT232_15035) - 3037787..3039142 (+) 1356 WP_015240776.1 YncE family protein -
  LT232_RS15040 (LT232_15040) - 3039182..3040558 (+) 1377 WP_094031367.1 YncE family protein -
  LT232_RS15045 (LT232_15045) - 3040565..3041077 (-) 513 Protein_2931 bacteriocin biosynthesis protein AlbG -
  LT232_RS15050 (LT232_15050) - 3041231..3041659 (+) 429 WP_007407634.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=636179 LT232_RS15030 WP_007407638.1 3036411..3037556(-) (rapF) [Bacillus velezensis strain GSBZ09]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=636179 LT232_RS15030 WP_007407638.1 3036411..3037556(-) (rapF) [Bacillus velezensis strain GSBZ09]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564