Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LT232_RS00935 Genome accession   NZ_CP089287
Coordinates   152503..152838 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 147503..157838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS00885 (LT232_00885) comGC 147694..148002 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LT232_RS00890 (LT232_00890) comGD 147992..148429 (+) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  LT232_RS00895 (LT232_00895) comGE 148413..148727 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  LT232_RS00900 (LT232_00900) comGF 148636..149136 (+) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  LT232_RS00905 (LT232_00905) comGG 149137..149514 (+) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  LT232_RS00910 (LT232_00910) - 149571..149750 (+) 180 WP_003153093.1 YqzE family protein -
  LT232_RS00915 (LT232_00915) - 149790..150119 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  LT232_RS00920 (LT232_00920) tapA 150378..151049 (+) 672 WP_124934997.1 amyloid fiber anchoring/assembly protein TapA -
  LT232_RS00925 (LT232_00925) sipW 151021..151605 (+) 585 WP_015240205.1 signal peptidase I SipW -
  LT232_RS00930 (LT232_00930) tasA 151670..152455 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  LT232_RS00935 (LT232_00935) sinR 152503..152838 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LT232_RS00940 (LT232_00940) sinI 152872..153045 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  LT232_RS00945 (LT232_00945) - 153222..154016 (-) 795 WP_076424968.1 YqhG family protein -
  LT232_RS00950 (LT232_00950) - 154038..155708 (-) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  LT232_RS00955 (LT232_00955) gcvT 156132..157232 (+) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=636134 LT232_RS00935 WP_003153104.1 152503..152838(-) (sinR) [Bacillus velezensis strain GSBZ09]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=636134 LT232_RS00935 WP_003153104.1 152503..152838(-) (sinR) [Bacillus velezensis strain GSBZ09]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991