Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUA82_RS03545 Genome accession   NZ_CP089286
Coordinates   892344..892814 (-) Length   156 a.a.
NCBI ID   WP_218194202.1    Uniprot ID   A0A9Q9BU36
Organism   Neoehrlichia mikurensis isolate 18-2837     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 887344..897814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA82_RS03535 (LUA82_03530) - 887564..890185 (+) 2622 WP_218213913.1 PD-(D/E)XK nuclease family protein -
  LUA82_RS03540 (LUA82_03535) - 890640..891872 (+) 1233 WP_218194203.1 MFS transporter -
  LUA82_RS03545 (LUA82_03540) ssb 892344..892814 (-) 471 WP_218194202.1 single-stranded DNA-binding protein Machinery gene
  LUA82_RS03550 (LUA82_03545) - 892944..894314 (+) 1371 WP_218213912.1 malonyl-CoA decarboxylase -
  LUA82_RS03555 (LUA82_03550) gatB 894342..895781 (+) 1440 WP_218194200.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LUA82_RS03565 (LUA82_03560) - 896418..897224 (+) 807 WP_218194466.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17651.74 Da        Isoelectric Point: 4.8299

>NTDB_id=636124 LUA82_RS03545 WP_218194202.1 892344..892814(-) (ssb) [Neoehrlichia mikurensis isolate 18-2837]
MSYIGVNKVILIGHLGKDPDVRIMQNGKEMASFSLATSEAWVDKSTGTRTEKTEWHNIVVFNEGLVKIIKNCVRKGSKVY
IEGSLKTRKWVDQNNTDRYTTEVVLQGFNSAFYMLDSKGNTQDGSFSTISEKQDSNDLQNENFNSIEVDIDDEIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=636124 LUA82_RS03545 WP_218194202.1 892344..892814(-) (ssb) [Neoehrlichia mikurensis isolate 18-2837]
ATGTCCTATATAGGTGTTAATAAAGTTATATTAATAGGCCATCTGGGTAAAGATCCTGATGTAAGAATAATGCAAAACGG
TAAGGAAATGGCTAGCTTTTCTCTTGCTACATCTGAAGCTTGGGTTGATAAGTCAACTGGTACTAGAACAGAAAAAACAG
AATGGCATAATATTGTAGTATTTAATGAAGGATTAGTTAAAATCATAAAAAACTGCGTGCGTAAAGGTTCTAAAGTATAT
ATAGAGGGTTCATTGAAAACTAGAAAATGGGTTGATCAAAATAATACAGATCGTTATACCACAGAAGTAGTACTTCAAGG
ATTTAATTCTGCATTTTATATGCTAGATTCTAAGGGTAATACCCAGGATGGATCATTTAGCACTATTAGTGAAAAACAAG
ATAGCAATGATTTACAAAATGAAAATTTCAATAGTATTGAAGTTGATATAGATGATGAAATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.134

100

0.506
  ssb Vibrio cholerae strain A1552

42.697

100

0.487
  ssb Neisseria gonorrhoeae MS11

33.702

100

0.391