Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUA81_RS03515 Genome accession   NZ_CP089285
Coordinates   892812..893282 (-) Length   156 a.a.
NCBI ID   WP_218194202.1    Uniprot ID   A0A9Q9BU36
Organism   Neoehrlichia mikurensis isolate 18-2804     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 887812..898282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA81_RS03505 (LUA81_03495) - 888032..890653 (+) 2622 WP_218213913.1 PD-(D/E)XK nuclease family protein -
  LUA81_RS03510 (LUA81_03500) - 891108..892340 (+) 1233 WP_218194203.1 MFS transporter -
  LUA81_RS03515 (LUA81_03505) ssb 892812..893282 (-) 471 WP_218194202.1 single-stranded DNA-binding protein Machinery gene
  LUA81_RS03520 (LUA81_03510) - 893412..894782 (+) 1371 WP_218213912.1 malonyl-CoA decarboxylase -
  LUA81_RS03525 (LUA81_03515) gatB 894810..896249 (+) 1440 WP_218194200.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LUA81_RS03535 (LUA81_03525) - 896886..897692 (+) 807 WP_218194466.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17651.74 Da        Isoelectric Point: 4.8299

>NTDB_id=636117 LUA81_RS03515 WP_218194202.1 892812..893282(-) (ssb) [Neoehrlichia mikurensis isolate 18-2804]
MSYIGVNKVILIGHLGKDPDVRIMQNGKEMASFSLATSEAWVDKSTGTRTEKTEWHNIVVFNEGLVKIIKNCVRKGSKVY
IEGSLKTRKWVDQNNTDRYTTEVVLQGFNSAFYMLDSKGNTQDGSFSTISEKQDSNDLQNENFNSIEVDIDDEIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=636117 LUA81_RS03515 WP_218194202.1 892812..893282(-) (ssb) [Neoehrlichia mikurensis isolate 18-2804]
ATGTCCTATATAGGTGTTAATAAAGTTATATTAATAGGCCATCTGGGTAAAGATCCTGATGTAAGAATAATGCAAAACGG
TAAGGAAATGGCTAGCTTTTCTCTTGCTACATCTGAAGCTTGGGTTGATAAGTCAACTGGTACTAGAACAGAAAAAACAG
AATGGCATAATATTGTAGTATTTAATGAAGGATTAGTTAAAATCATAAAAAACTGCGTGCGTAAAGGTTCTAAAGTATAT
ATAGAGGGTTCATTGAAAACTAGAAAATGGGTTGATCAAAATAATACAGATCGTTATACCACAGAAGTAGTACTTCAAGG
ATTTAATTCTGCATTTTATATGCTAGATTCTAAGGGTAATACCCAGGATGGATCATTTAGCACTATTAGTGAAAAACAAG
ATAGCAATGATTTACAAAATGAAAATTTCAATAGTATTGAAGTTGATATAGATGATGAAATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.134

100

0.506
  ssb Vibrio cholerae strain A1552

42.697

100

0.487
  ssb Neisseria gonorrhoeae MS11

33.702

100

0.391