Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LTQ02_RS12275 Genome accession   NZ_CP089205
Coordinates   2696942..2697574 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio splendidus strain 4_C08b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2691942..2702574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS12255 (LTQ02_12255) - 2693704..2694174 (+) 471 WP_004729647.1 TIGR02444 family protein -
  LTQ02_RS12260 (LTQ02_12260) - 2694451..2695443 (+) 993 WP_017088963.1 hydrolase -
  LTQ02_RS12265 (LTQ02_12265) - 2695543..2695755 (+) 213 WP_004729649.1 YheU family protein -
  LTQ02_RS12270 (LTQ02_12270) - 2695833..2696702 (+) 870 WP_004729650.1 phosphoribulokinase -
  LTQ02_RS12275 (LTQ02_12275) crp 2696942..2697574 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  LTQ02_RS12280 (LTQ02_12280) - 2697793..2698584 (-) 792 WP_004729652.1 DUF1338 domain-containing protein -
  LTQ02_RS12285 (LTQ02_12285) astD 2698842..2700299 (-) 1458 WP_243578746.1 succinylglutamate-semialdehyde dehydrogenase -
  LTQ02_RS12290 (LTQ02_12290) astA 2700339..2701358 (-) 1020 WP_004729654.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=635756 LTQ02_RS12275 WP_004729651.1 2696942..2697574(+) (crp) [Vibrio splendidus strain 4_C08b]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=635756 LTQ02_RS12275 WP_004729651.1 2696942..2697574(+) (crp) [Vibrio splendidus strain 4_C08b]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAATCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467