Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LTQ03_RS09700 Genome accession   NZ_CP089201
Coordinates   2098468..2099073 (-) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus strain 1_C04a     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2093468..2104073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS09690 (LTQ03_09690) aceF 2094472..2096364 (+) 1893 WP_108123831.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LTQ03_RS09695 (LTQ03_09695) lpdA 2096607..2098034 (+) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  LTQ03_RS09700 (LTQ03_09700) opaR 2098468..2099073 (-) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LTQ03_RS09705 (LTQ03_09705) hpt 2099411..2099941 (+) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  LTQ03_RS09710 (LTQ03_09710) can 2100020..2100679 (-) 660 WP_004735453.1 carbonate dehydratase -
  LTQ03_RS09715 (LTQ03_09715) - 2100967..2102598 (+) 1632 WP_029222729.1 SulP family inorganic anion transporter -
  LTQ03_RS09720 (LTQ03_09720) - 2102920..2103837 (+) 918 WP_017093872.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=635671 LTQ03_RS09700 WP_017079965.1 2098468..2099073(-) (opaR) [Vibrio splendidus strain 1_C04a]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=635671 LTQ03_RS09700 WP_017079965.1 2098468..2099073(-) (opaR) [Vibrio splendidus strain 1_C04a]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACCGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726