Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LTQ03_RS09700 Genome accession   NZ_CP089201
Coordinates   2098468..2099073 (-) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus strain 1_C04a     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2080604..2098034 2098468..2099073 flank 434


Gene organization within MGE regions


Location: 2080604..2099073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS09620 (LTQ03_09620) rimM 2080604..2081158 (+) 555 WP_004735510.1 ribosome maturation factor RimM -
  LTQ03_RS09625 (LTQ03_09625) trmD 2081185..2081925 (+) 741 WP_004735512.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LTQ03_RS09630 (LTQ03_09630) rplS 2081985..2082338 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  LTQ03_RS09635 (LTQ03_09635) yacG 2082658..2082855 (-) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  LTQ03_RS09640 (LTQ03_09640) zapD 2082937..2083677 (-) 741 WP_017088714.1 cell division protein ZapD -
  LTQ03_RS09645 (LTQ03_09645) coaE 2083704..2084318 (-) 615 WP_243583225.1 dephospho-CoA kinase -
  LTQ03_RS09650 (LTQ03_09650) pilD 2084321..2085190 (-) 870 WP_017088712.1 A24 family peptidase Machinery gene
  LTQ03_RS09655 (LTQ03_09655) pilC 2085258..2086487 (-) 1230 WP_243583226.1 type II secretion system F family protein Machinery gene
  LTQ03_RS09660 (LTQ03_09660) pilB 2086502..2088187 (-) 1686 WP_243583227.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LTQ03_RS09665 (LTQ03_09665) pilA 2088190..2088648 (-) 459 WP_243583228.1 pilin Machinery gene
  LTQ03_RS09670 (LTQ03_09670) nadC 2088904..2089794 (-) 891 WP_017079961.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LTQ03_RS09675 (LTQ03_09675) ampD 2089878..2090477 (+) 600 WP_243583229.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LTQ03_RS09680 (LTQ03_09680) pdhR 2090958..2091719 (+) 762 WP_009847596.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  LTQ03_RS09685 (LTQ03_09685) aceE 2091782..2094445 (+) 2664 WP_243583230.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type -
  LTQ03_RS09690 (LTQ03_09690) aceF 2094472..2096364 (+) 1893 WP_108123831.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LTQ03_RS09695 (LTQ03_09695) lpdA 2096607..2098034 (+) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  LTQ03_RS09700 (LTQ03_09700) opaR 2098468..2099073 (-) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=635671 LTQ03_RS09700 WP_017079965.1 2098468..2099073(-) (opaR) [Vibrio splendidus strain 1_C04a]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=635671 LTQ03_RS09700 WP_017079965.1 2098468..2099073(-) (opaR) [Vibrio splendidus strain 1_C04a]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACCGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726